Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00405 ATGTCTTTGCAGCTCATTGGTGTTCCTGATCGAGCTGAGAAAGATGAAATTGTTAAGGCAGTTATGGGATTGAAAAATGCAGAAATTGATGAAGGTTACACAATGGATGTTGTTACAGTTCGTCAGGATCTTCTGATGGATGTTAGGGATAAGCTTCTTTTTGAGCCAGAATATGCTGGTAACCTGAGGGAAAAGATTCCCCCTAAATCTTCCCTTCGAATTCCTTGGTCTTGGTTGCCAGGTGCTCTATGCCTTCTTCAAGAGGTTGGAGAATCAAAGCTTGTGCTGGAGATTGGACAGACAAGTCTTCAGCATCAAAATGCCAAGCCATATACAGATGACTTGATTCTTTCTATGTCGCTAGCTGAGTGTGCAGTCGCAAAGATTGGCTTTGAGAAGAAAAAAGTATCTCAAGGTTTTGAAGCTCTTGCTCGTGCTCAGTGTCTTCTAAGAAGTAAACCATCTCTAGCAAAAATGACACTGCTATCTCAGATTGAAGAATCTCTTGAAGAGCTTGCACCTGCTTGTACCTTGGAACTACTGAGCATGCCACAAACTCCTGAAAATGTTGATAGGAGACGGGGAGCAATTTTGGCTCTGCGGGAATTGCTCAGGCAGGGTCTTGACGTTGAAGCTTCATGCCAAGTACAGGATTGGCCTTCCTTTCTAAGCCAGGCATTTGACAGTTTGCTGGCTAAAGAGATCGTTGATCTTCTTCCTTGGGATAACTTAGCAGTGATGCGAAAGAATAAGAAGACTATTGAATCACAGAATCTAAGGGCAGTTATTGATTCTAATTGTTTGTACAGAGTTTTTAAAGCTCATATGGCAATTGGGTTTTCCAGCAAGCAAAAAGAGTTGATTAACAAAGCAAAGGGCATATGTGAATGTTTGATAGCTTCGGAGGGTATTGATTTGAAGTTTGAGGAAGCTTTTTGCTTATTCCTACTTGGCCAGGGCACGGAGGCTGAGGTGGTTGAAAAGCTTAAGCAACTTGAGCTAAACTCAAATCCCAAAAATAATTCTGTCTTGGGGAAGGCAATAATGGATGCTTCTGCTGTAAACCCATCATTGGAAGTGTGGCTGAAGGATTCTGTGCTTGCATTATATCCGGATACTAAAGATTGTTCTCCAGCTCTGGCCACTTTCTTTAATGCTCAGCAGAAATTTTCTGGAAGCAAGAATTCTAAAGGAGCTCAACAAATGTTTCCCACTATATGTCATAGACCCCTATCCTCGTCTGGTTCCTTAGAACGAAGAGATGTTGAGGAATCTCGCTCATACATGAGCTCTTCTCCTAATCTAGGGTTTGCTGTCAAGCAGCTGACTCCTACAGATTTGCGGAGTTCGTTGCTATCTGGAAGAAATGAAAATGGAGGCAACTCTGTTGAGTTACCCATTCAAGTAAAAAGGAACCTTGGTAGTCAGCGCAATTCAGGAATTTGGCATAATTACTTCCCTGTTGGACAAATATTTGAAAGAATAACATACATGACTGTATTGGGTTGTATTGCATTTGCTACCATTAAGTTGTCAGGAATTGGCCTAAGCAAGACTCTTGCTGGTTCTCATCGGACTTTTACTAAACCCAATGAAAACATTGCTTGGACCGCAGATTCAGCTGACTACCCTGTAGGCCCTGCTTATATTAGGCAAAGTATTATGGCCAACAAACTGAAGAGGATCCTGACAACATTTAAGATGCAGTTGTTGCCCCAGTCAAATGCTGAAAAGCATAGTGATTTACGCACTATTCGTACCTCATCATCCTCCCCTATTAATGTTTCCAGAAGACCGATGCCTGCAGAAGAAGCAGAAACCATTGTCAGGCAATGGCAAACAATCAAAGCTGAAGCTTTGGGGCCTGGCCATGAAGTTAATTACCTAGCTCAAGTTCTTGACGAATCTATGCTTGCTCAGTGGAAAGCTTTGGCCAATGCTGCAAAAGAAAGATCTTGTTACTGGAGATTTCTTTTGCTAAAGTTATCCATCACTCGAGCTGACATTCTATCAGATGGAAATGGAGCTGACATGGCAGAAATAGAAGCTCTCTTAGAGGAAGCAGCTGAACTCATTGAATGTTCTCAGCAAAAGAACCCAAACTACTATCTCACTTACAAAGTTAAGTATGTTATGAAGAGGCAAGACGATGGATCATGGAAGTTCTGTGAAAATGATATAGGAACACCATGA 2193 0.4181 MSLQLIGVPDRAEKDEIVKAVMGLKNAEIDEGYTMDVVTVRQDLLMDVRDKLLFEPEYAGNLREKIPPKSSLRIPWSWLPGALCLLQEVGESKLVLEIGQTSLQHQNAKPYTDDLILSMSLAECAVAKIGFEKKKVSQGFEALARAQCLLRSKPSLAKMTLLSQIEESLEELAPACTLELLSMPQTPENVDRRRGAILALRELLRQGLDVEASCQVQDWPSFLSQAFDSLLAKEIVDLLPWDNLAVMRKNKKTIESQNLRAVIDSNCLYRVFKAHMAIGFSSKQKELINKAKGICECLIASEGIDLKFEEAFCLFLLGQGTEAEVVEKLKQLELNSNPKNNSVLGKAIMDASAVNPSLEVWLKDSVLALYPDTKDCSPALATFFNAQQKFSGSKNSKGAQQMFPTICHRPLSSSGSLERRDVEESRSYMSSSPNLGFAVKQLTPTDLRSSLLSGRNENGGNSVELPIQVKRNLGSQRNSGIWHNYFPVGQIFERITYMTVLGCIAFATIKLSGIGLSKTLAGSHRTFTKPNENIAWTADSADYPVGPAYIRQSIMANKLKRILTTFKMQLLPQSNAEKHSDLRTIRTSSSSPINVSRRPMPAEEAETIVRQWQTIKAEALGPGHEVNYLAQVLDESMLAQWKALANAAKERSCYWRFLLLKLSITRADILSDGNGADMAEIEALLEEAAELIECSQQKNPNYYLTYKVKYVMKRQDDGSWKFCENDIGTP 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00405 730 PANTHER PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC-RELATED 4 727 IPR044685 -
Cca08g00405 730 Pfam ARC6-like, IMS domain 605 722 IPR025344 -
Cca08g00405 730 MobiDBLite consensus disorder prediction 581 600 - -
Cca08g00405 730 Coils Coil 678 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00405 Cca-Chr8 6148679 6153504 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00405 - - gmx:100801086 1297.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00405 08 6148679 6153504 Cca08g00405 08 6148679 6153504 ECH