Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00309 ATGTTGGATCCAGCCACTGAATTGGTGCCACCACCATCTTCACCCACTATTTCTTCCATTTCTTCCTCTGATCTTGACACTGAGTCCACCGGATCCTTCTTCCATGACAGAAGCACCACATTGGGGACTCTAATGGGAGTCAACTTCCCAACCATTGCATTCAGAGTCCCATCGCAGAACCGGAACCCTAATTCTGCCGCCGAGGCAGCCGGAGGCTCAAGGAGGATCGCCGCCGCAGCCAAGAAGAAGAAAAAGGCTACCTCCACCGTGACGGCGGCGGAGAGACGGCGGAGGTGGTGGCAGCTCTGCCGCGACGGCGATTCTAAGCCGGCTTCGCTGGGCGAGTTTCTGGAGGTGGAGCGGCGGTTCGGCGACGGCGCGTTCTACGGCACGGCGGCGGAGCTCGAGGGGATGGTCGCCGGCCACCAGCAGAGGAACGGCAGCAGGGTGCTATTCGCCGATGGGAGGGTTCTTCCGCCGCCGTCCGACGTCGACGACGGAGCTACGGCGGCGGAGAGTCTCTGCAATATGTTTCCGGTGTCTCTCGCCGGAATCTGCAGCGGCGGTGCGGCTTAG 576 0.6146 MLDPATELVPPPSSPTISSISSSDLDTESTGSFFHDRSTTLGTLMGVNFPTIAFRVPSQNRNPNSAAEAAGGSRRIAAAAKKKKKATSTVTAAERRRRWWQLCRDGDSKPASLGEFLEVERRFGDGAFYGTAAELEGMVAGHQQRNGSRVLFADGRVLPPPSDVDDGATAAESLCNMFPVSLAGICSGGAA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00309 191 PANTHER - 1 190 IPR040344 -
Cca08g00309 191 Coils Coil 76 96 - -
Cca08g00309 191 PANTHER BNAANNG11020D PROTEIN 1 190 - -
Cca08g00309 191 MobiDBLite consensus disorder prediction 12 31 - -
Cca08g00309 191 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00309 Cca-Chr8 4570015 4571199 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00309 - - gmx:100778596 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00309 08 4570015 4571199 Cca08g00309 08 4570015 4571199 ECH
Cca09g02837 09 53953698 53954676 Cca08g00309 08 4570015 4571199 PCT