Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00307 ATGGAAGAAGAACAACCATGGATTTTGCCCGACATACAAATCTTCAATTCACAAAATATTAAAAACATATCAAGCTGTGTAGTATCTTGCAAGCTGTGTACGACACCGATTCGCGATCACAAATCCTTCTCCGCAATGGCGTCTCCCAAAGCGATCGGCTTCGTCGGCTTCGACCAATTCAGCTTCCAGATGGCGTCTTCCGCTATTCGCCATGGCTACCGCGTGCAAGCTTTCGAGATAAATGATCCCATCATTGAAGAACTAGTGAAGCTTGGGGGAGTTAGATGTTCAAGCCCTTCGGAAGCAGGGAGAGATGTGTCAGCTTTAGTTGTCCTAGTATCTCACATGGATCAAACTAAAGATCTCATTTTTGGAGATGAGGGTGCTTTGAAAGATCTAAAATCAGACACGGTTCTTATTATCCGTTCTACTATATTACCATCATTTCTTCAGAAACTGGAGAAGGATCTGGCAGAAATTCATAAGATAGCTTATGTTGTTGATGCGTATGTCTCTTATGGGAGATCCGATGCTCTGAATGGAAAAATTATTATTGCGTCATCAGGAAGACTAGATGCCATTGCAAGAGCACGGCCTATGCTTTCTGCAATGAGTGAAAAGCTCTTCACTTTTGAGGGTGAAATTGGTGGTGGCAGTAAGGTTAAAATGGTTACTGTGATGCTGGAAGGCATTCATTTTATTAATTCAGTGGAGGCTCTCTCTCTTGGTGCCAAAATCGGAATTCATCCATGGATAATCTATGATATAATTTCCAATGCTGCTGGAAATTCATGGTATGTGGTATTCAAGAATTATGTTCCTATTTTGTTGAAGGGAGAGGTTAATCATCAAATTCTGAACACTTACGTTAAAGAGTTGGAAATCATTTTGAATATGTCCAAGTCACTTACTTTTCCACTTCCAATTTTGGCTGCTACTCATCTACAACTTATTCACGGGGTTTCACTTGTTGGTAGTGGAGATGATGTTACATCATTAATCAAGGTTTGGGAAAAGGTTTATGGGGTTAACATTTCAGAAGCTGCAAATGCCGAAGCATATGACCCCGAGCAACTGGCATCTGAATTTACTAATGATTCTAAGAATGGGAGAAGGGTTGGTTTTATTGGTCTTGGAGCTATGGGATTTGGCATGGCAACTCATTTACTGAGTTCAAAATTCTGCGTTGTTGGTTATGATGTGTATAAACCAACTCTTACACGATTTACGAATGCTGGTGGCTTGATTGGAAATTCTCCAGCTGAAGTGAGTAAAGATGCTGATGTTCTCATAATCATGGTCACAAATGAAGCTCAAGCAGAAAATGCTTTATATGGAGAATATGGTGCAGTTTCAGCTCTTCCCCCAGGAGCAACTATCATCCTCTCTTCTACTGTTTCTCCTGCATATGTGAGTCAGCTGGAGCACAGATTGCATAATGAAGGTAAGAATTTGAAGTTGGTGGATGCTCCGGTTTCTGGTGGTGTTAAGAGGGCCTCAATGGGAACACTTACGATAATGGCTGCTGGAACTGATGATGCTCTGAAGAGTGCTGGTCTAGTCTTAGCAGCCTTGAGTGAGAAGCTTTATATTATCAAAGGTGGTTGTGGTTCTGGAAGTGGTATAAAGATGATTAACCAATTGCTTGCTGGAGTTCATATCACCTCAGCTGCCGAGGCAATGGCATTTGCAGCACGGTTGGGTTTGAATACAAGACTGTTGTTCGATTTTATTACAATTAGTGGGGGAGCTTCCTGGATGCTTGAAAATCGTGGCCCACACATGATTGACAATGATTACACACCTTGTTCAGCACTAGATATCTTTGTGAAGGACTTGGGAATTGTCACTCGTGAATCATCATCGTGGAAAGTTCCACTTCACTTATCAACTATTGCTCACCAACTGTATCTGGCAGGTTCTGCTGCTGGTTGGGGACGGATTGATGATGCTGGTGTGGTCAAGGTTTATGAGATGCTAACTGGTGTTAGAGTTGAAGGAAAACTCCAGGCTCAAAGGAGAGATGTCGTATTACATTCTCTTCCACCCGAGTGGCCCCAAGATCATGTTCTTGATATAAAAACACTAAAAGAAGGCAATTCAAAGATCTTAGTTGTTTTGGATGATGATCCGACAGGAACACAAACTGTTCATGATATTGAAGTATTAACGGAATGGACCATTGAGTCACTTGTTGAGCAGTTCAGAAAAAGTCCAAAATGCTTTTTCATTTTGACTAACTCCAGGTCACTGAGTTCTGAGAAGGCCAGTGCATTGATAAAAGAGATTTGCAGAAATCTAGACACTGCAGCAAAATCAGTTGACAACATTGATTATACTGTAGTTTTGAGGGGAGATTCAACTTTACGTGGTCATTTTCCTGAGGCAAGGATGATGAATTTTAGCTCAATAACAGATGCTGTTGTTTCAGTATTGGGTGAAATGGATGCATGGATAATTTGCCCCTTTTTCCTTCAAGGAGGCCGTTACACTATTGGAGACATACACTATGTTAATGATTCTGATGTGCTTGTTCCAGCAGGGGACACAGAGTTTGCCAAAGATGCTGCCTTTGGCTACAAATCTTCAAACCTGCGTGATTGGGTAGAGGAGAAGACAAATGGCCGAATACTTGCAAGTAGTGTTGTATCTATTTCAATTGAACTTTTGAGGAAAGGTGGTCCGGAGGCAGTTTGTCAGCATCTATGCAATTTGCAGAAGGGGTCAATATGCATAGTTAATGCAGCTAGTGAAAGAGACATGACTGTATTTGCACTTGGAATGATCAAGGCAGAATTAATGGGAAAACGTTTCTTGTGTCGCACTGCTGCTAGTTTTGTTTCTGCCCTTATGGGAATCATCCCTAAGCCTCCGATTTTGCCTAATGATCTAGGAATAGCAAGAGAGAGGAATGGTGGTTTGATAGTTGTGGGATCCTATGTTCCAAAAACTACAAAGCAGGTTGAAGAGCTCAAATTACAGTGTGGTCATTTCTTAAAAAGCATTGAGGTATCAGTCGAAAAACTTGCAATGAGTCACATTGAGGAGAGGGAGGAGGAAATCAGTAAAACAGCTGAATTAGCAGATATATATCTTAAAGCTCATAAAGACACTCTCATAATGACCAGCCGAAATCTCATAACAGGAAGAACTGCTGCTGAGAGTCTGGACATTAACTTTAAAGTGAGTTCTGCTTTGGTGGAAATAGTGAAAAGAATAACTACAAAACCTCGCTATATAATTGCAAAGGGTGGTATTACGTCTTCAGACCTTGCCACAAAAGCCCTTGGTGCAAGATGTGCGAAGATAGTTGGACAAGCACTTGCTGGTATTCCCTTGTGGCAATTAGGCCTTGAAAGTAGACATCCTGGAGTTCCTTACATTGTCTTCCCTGGTAATGTTGGTGACAGCACAGCATTGGCAGAAGTTGTGAAGTCCTGGACTTGTCCAATCAGTCTTGCATCCACAAAAGAAATTCTTAATAATGCTGAAAGGGGTGGATATGCTGTTGGAGCATTTAATGTCTATAATTTGGAAGGAGTTGAGGCTGTTGTTTCTGCTGCTGAGGAAGAAAAAAGTCCAGCTATATTACAGATCCATCCAGGTGCCTTGAAGGAAGGTGGAAATCCCTTGGTTGCTTGTTGCATTTCTGCTGCAAAGCAAGCCAGTGTTCCCATTTCTGTTCACTTTGATCATGGAACTTCAAAGCAGGATCTTGTGGAAGCTCTTGACCTGGGATTCAGTTCTGTGATGGTTGATGGTTCGCATCTTTCTTTCAACGAAAATGCTGCATACACAAAATTTATATCATTACTGGCTCACTCAAGAGATATGTTGGTTGAAGCTGAGCTAGGAAGATTGTCAGGAACAGAAGATGATTTAACTGTAGAAGAATATGAAGCCAGACTAACAGATGTTGATATGGCATCAAAATTTATTGATGAGACTGGCATAGATGCTTTGGCAGTGTGTATTGGCAATGTACATGGAAAGTACCCTGCAAGTGGTCCAAATCTCAGATTTGATCTTCTTAAGGAGCTACACGCTTTGAGCCTGAAGAAAGGAGTTTTTCTGGTGCTTCATGGTGCGTCTGGTTTGAGCAAAGAACATGTCAAGGAGTGCATAAACCTTGGTGTTAGAAAGTTCAATGTCAACACCGAAGTAAGGATAGCATTCATGGACTCCCTCATTACCCCCAAGAAGGATCTAGTTCATGTTATGGCTTCTGCAAAGGAAGCCATGAAAGCTCTAGCCATATTGGTGACTATCATCATCATATTATTTTTCTATTATATTGTCTTGTGTGATTATTATTGTGTAGAGAGGAGAAGGATAAACTCATGA 4344 0.4125 MEEEQPWILPDIQIFNSQNIKNISSCVVSCKLCTTPIRDHKSFSAMASPKAIGFVGFDQFSFQMASSAIRHGYRVQAFEINDPIIEELVKLGGVRCSSPSEAGRDVSALVVLVSHMDQTKDLIFGDEGALKDLKSDTVLIIRSTILPSFLQKLEKDLAEIHKIAYVVDAYVSYGRSDALNGKIIIASSGRLDAIARARPMLSAMSEKLFTFEGEIGGGSKVKMVTVMLEGIHFINSVEALSLGAKIGIHPWIIYDIISNAAGNSWYVVFKNYVPILLKGEVNHQILNTYVKELEIILNMSKSLTFPLPILAATHLQLIHGVSLVGSGDDVTSLIKVWEKVYGVNISEAANAEAYDPEQLASEFTNDSKNGRRVGFIGLGAMGFGMATHLLSSKFCVVGYDVYKPTLTRFTNAGGLIGNSPAEVSKDADVLIIMVTNEAQAENALYGEYGAVSALPPGATIILSSTVSPAYVSQLEHRLHNEGKNLKLVDAPVSGGVKRASMGTLTIMAAGTDDALKSAGLVLAALSEKLYIIKGGCGSGSGIKMINQLLAGVHITSAAEAMAFAARLGLNTRLLFDFITISGGASWMLENRGPHMIDNDYTPCSALDIFVKDLGIVTRESSSWKVPLHLSTIAHQLYLAGSAAGWGRIDDAGVVKVYEMLTGVRVEGKLQAQRRDVVLHSLPPEWPQDHVLDIKTLKEGNSKILVVLDDDPTGTQTVHDIEVLTEWTIESLVEQFRKSPKCFFILTNSRSLSSEKASALIKEICRNLDTAAKSVDNIDYTVVLRGDSTLRGHFPEARMMNFSSITDAVVSVLGEMDAWIICPFFLQGGRYTIGDIHYVNDSDVLVPAGDTEFAKDAAFGYKSSNLRDWVEEKTNGRILASSVVSISIELLRKGGPEAVCQHLCNLQKGSICIVNAASERDMTVFALGMIKAELMGKRFLCRTAASFVSALMGIIPKPPILPNDLGIARERNGGLIVVGSYVPKTTKQVEELKLQCGHFLKSIEVSVEKLAMSHIEEREEEISKTAELADIYLKAHKDTLIMTSRNLITGRTAAESLDINFKVSSALVEIVKRITTKPRYIIAKGGITSSDLATKALGARCAKIVGQALAGIPLWQLGLESRHPGVPYIVFPGNVGDSTALAEVVKSWTCPISLASTKEILNNAERGGYAVGAFNVYNLEGVEAVVSAAEEEKSPAILQIHPGALKEGGNPLVACCISAAKQASVPISVHFDHGTSKQDLVEALDLGFSSVMVDGSHLSFNENAAYTKFISLLAHSRDMLVEAELGRLSGTEDDLTVEEYEARLTDVDMASKFIDETGIDALAVCIGNVHGKYPASGPNLRFDLLKELHALSLKKGVFLVLHGASGLSKEHVKECINLGVRKFNVNTEVRIAFMDSLITPKKDLVHVMASAKEAMKALAILVTIIIILFFYYIVLCDYYCVERRRINS 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00307 1447 CDD TBP_aldolase_IIB 1156 1419 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cca08g00307 1447 Gene3D Aldolase class I 1147 1422 IPR013785 -
Cca08g00307 1447 Gene3D - 366 533 - -
Cca08g00307 1447 Gene3D - 46 213 - -
Cca08g00307 1447 Pfam Fructose-bisphosphate aldolase class-II 1155 1417 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cca08g00307 1447 PANTHER ALDOLASE-RELATED 328 1358 - -
Cca08g00307 1447 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 375 388 IPR002204 GO:0016491
Cca08g00307 1447 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 536 658 IPR008927 -
Cca08g00307 1447 Gene3D - 703 952 IPR037051 -
Cca08g00307 1447 TIGRFAM cbbA: ketose-bisphosphate aldolase 1152 1397 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cca08g00307 1447 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 537 657 IPR029154 GO:0051287
Cca08g00307 1447 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 216 336 IPR029154 GO:0051287
Cca08g00307 1447 Pfam Nucleotide-binding C-terminal domain 974 1140 IPR031475 -
Cca08g00307 1447 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 328 1358 - -
Cca08g00307 1447 SUPERFAMILY Aldolase 1155 1419 - -
Cca08g00307 1447 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 208 IPR036291 -
Cca08g00307 1447 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 52 209 IPR006115 GO:0050661
Cca08g00307 1447 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 372 530 IPR006115 GO:0050661
Cca08g00307 1447 Gene3D - 965 1146 IPR042213 -
Cca08g00307 1447 SUPERFAMILY YgbK-like 704 1144 - -
Cca08g00307 1447 PANTHER ALDOLASE-RELATED 44 318 - -
Cca08g00307 1447 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 372 528 IPR036291 -
Cca08g00307 1447 Pfam Sugar-binding N-terminal domain 704 950 IPR010737 -
Cca08g00307 1447 Gene3D - 534 665 IPR013328 GO:0016491
Cca08g00307 1447 Gene3D - 214 346 IPR013328 GO:0016491
Cca08g00307 1447 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 214 344 IPR008927 -
Cca08g00307 1447 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 44 318 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00307 - - gmx:100779987 2420.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00307 08 4526005 4554256 Cca08g00307 08 4526005 4554256 ECH