Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00306 ATGGCGGATCAGAGCCCGAAACCAGAGACCTTCGAACTCAACAATGGCACTATCCAGGTCCTCCTCACCAATCTCGGATGCACCATCATCTCCTTATCCGTGCCAGGAAAAGATGGGGTGTTATCCGACGTCGTTCTTGGCCTCGACTCTGTTGAATCCTACCAGAAAGGTCTTGCTCCTTATTTTGGCTGCATTGTGGGTCGGGTTGCGAACCGAATTAAGGATGGCAAGTTTACACTTGACGGGGTTCAGTACACTTTGCCTGTCAACAAACCCCCAAACAGTCTCCATGGTGGAAATGTTGGATTTGATAAGAAGGTATGGGAGGTAGTTGAACATAAAAAAGGGGAAACCCCCTCAATCACTTTTAAGTATCACAGTCATGATGGAGAAGAAGGTTATCCTGGGGATATCACTGTTACCGCAACTTACACACTCACCTCAAGCACAACTCTGAGGCTTGACATGGAGGGAGTGCCAAAAGACAAGGCCACCATAATTAACTTAGCTCAGCATACCTACTGGAACTTAGCTGGCCACAACTCTGGGAACATACTTGACCATTCAATTCAGTTATGGGCTAATCATGTCACTCCCGTGGATGAGAACACCGTGCCAACAGGTGAAATCAAGCCGGTGAAGGGTACCCCTTTTGATTTTACATCTGAGAAGAGAATCGGCGACACCATAAACCAGGTCGGAATGGGATATGACCACAATTATGTGCTTGATTGTGGGGAAGAGAAGGCTGGTTTGAAACACGTGGCGAAAGTGAGGGATCCATCAAGTTCAAGGGTTCTAAACTTGTGGACAAGTGCGCCCGGTGTGCAATTTTACACTGCAAACTATGTTAATGGTGTTCATGGAAAAGGAGGTGCTGTATATGGAAAGCATGCTGGCTTGTGTTTGGAGACACAAGGTTTTCCTAATGCCATAAACCAGCCAAATTTTCCATCTGTGGCAGTTCGTCCTGGTCAGAAATATCAACATACCATGTTGTTTGAGTTTTCACTTGAGTGA 1020 0.4627 MADQSPKPETFELNNGTIQVLLTNLGCTIISLSVPGKDGVLSDVVLGLDSVESYQKGLAPYFGCIVGRVANRIKDGKFTLDGVQYTLPVNKPPNSLHGGNVGFDKKVWEVVEHKKGETPSITFKYHSHDGEEGYPGDITVTATYTLTSSTTLRLDMEGVPKDKATIINLAQHTYWNLAGHNSGNILDHSIQLWANHVTPVDENTVPTGEIKPVKGTPFDFTSEKRIGDTINQVGMGYDHNYVLDCGEEKAGLKHVAKVRDPSSSRVLNLWTSAPGVQFYTANYVNGVHGKGGAVYGKHAGLCLETQGFPNAINQPNFPSVAVRPGQKYQHTMLFEFSLE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00306 339 PIRSF GALM 2 339 IPR015443 GO:0016853|GO:0019318
Cca08g00306 339 CDD galactose_mutarotase_like 14 336 - -
Cca08g00306 339 Gene3D - 2 338 IPR014718 GO:0030246
Cca08g00306 339 PANTHER ALDOSE-1-EPIMERASE 9 338 - -
Cca08g00306 339 SUPERFAMILY Galactose mutarotase-like 9 337 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca08g00306 339 Pfam Aldose 1-epimerase 10 334 IPR008183 GO:0005975|GO:0016853
Cca08g00306 339 PANTHER ALDOSE 1-EPIMERASE 9 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00306 Cca-Chr8 4520236 4523057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00306 7 337 Miscellaneous Gene Families AT3G47800 50.453 3.29e-108 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00306 K01785 - gmx:100776238 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00306 08 4520236 4523057 Cca08g00306 08 4520236 4523057 ECH