Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00301 ATGAGAAGGCTACCCTCCATTCTCTTCAGAAACCTcgccgccccacgcgccgccgcctcctacgccgtccccaaccgccttctccgtgctccctttcacaccgccgccgccacctctcaccgccgccgcctctcctcgctcctcggccccttcgccgccgcctctctcggcgtcgccggcgccCTCTTCTCCCAGGAAGTCCTCGCCAAGGAGCCCCTGCCGCCCGAGGCTCTCCCACGCGACGTCGTTCTTTACCAGTTCGAGGCTTGCCCTTTCTGCAACAAAGTCAAAGCATTTTTGGACTACTATGATATACCTTACAAAGTTGTGGAGGTCAACCCTCTCAGTAAGAAAGAAATCAAATGGTCTGAGTATCAGAAGGTGCCAATAGTGATGGTAGATGGCGAGCAGCTAAATGATTCATCAGTTATAATTGACAAGCTGAGACATAAGGTTCTGTCAAAGGAAATTGCAGACTCAACTTCTGAGGATGAAGAGACAAAATGGCGGCGGTGGGTTGATAATCATTTGGTGCATGTTCTGTCACCAAACATATATCGAAATACATCTGAAGCACTTGAATCCTTTGAGTATATTACGAGCAATGGCAATTTCAGCTATTTAGAAAAAATTTCGGTGAAGTATGCTGGAGCTGTAGCTATGTATTATGTGTCTAAGAATCTGAAGAAGAAATATAACATTACTGATGAACGAGCTGCTCTATATGAGGCAGCAGAAACATGGGTAGATGCTCTGGATGGCCGGGAGTTCCTTGGAGGGTCTAAGCCTAACTTAGCCGACCTGGCCGTCTTTGGGGTTCTAAGACCCATACGCTATTTAAGGTCTGGCAAGGATATGGTAGAGAATACTCGTATTGGTGAGTGGTATGCCAGAATGGAGAGTTCTGTGGGAGAGCCTTCCCGGATTAAAGTCTAA 936 0.375 MRRLPSILFRNLAAPRAAASYAVPNRLLRAPFHTAAATSHRRRLSSLLGPFAAASLGVAGALFSQEVLAKEPLPPEALPRDVVLYQFEACPFCNKVKAFLDYYDIPYKVVEVNPLSKKEIKWSEYQKVPIVMVDGEQLNDSSVIIDKLRHKVLSKEIADSTSEDEETKWRRWVDNHLVHVLSPNIYRNTSEALESFEYITSNGNFSYLEKISVKYAGAVAMYYVSKNLKKKYNITDERAALYEAAETWVDALDGREFLGGSKPNLADLAVFGVLRPIRYLRSGKDMVENTRIGEWYARMESSVGEPSRIKV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00301 311 SUPERFAMILY Thioredoxin-like 81 153 IPR036249 -
Cca08g00301 311 ProSitePatterns Glutaredoxin active site. 84 100 IPR011767 -
Cca08g00301 311 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 80 156 IPR004045 -
Cca08g00301 311 SUPERFAMILY GST C-terminal domain-like 159 303 IPR036282 -
Cca08g00301 311 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 37 310 - -
Cca08g00301 311 PANTHER PROSTAGLANDIN E SYNTHASE 2-RELATED 37 310 - -
Cca08g00301 311 ProSiteProfiles Glutaredoxin domain profile. 70 164 - -
Cca08g00301 311 Pfam Glutathione S-transferase, N-terminal domain 84 150 IPR004045 -
Cca08g00301 311 Gene3D - 159 309 - -
Cca08g00301 311 Gene3D Glutaredoxin 76 155 - -
Cca08g00301 311 SFLD Glutathione Transferase (cytosolic) 61 310 IPR040079 -
Cca08g00301 311 CDD GST_C_mPGES2 162 305 IPR034335 -
Cca08g00301 311 SFLD Prostaglandin E synthase like.1 61 310 IPR034334 GO:0050220
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00301 Cca-Chr8 4401268 4407080 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00301 K05309 - gmx:100811576 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00301 08 4401268 4407080 Cca08g00301 08 4401268 4407080 ECH