Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00294 ATGGCTGTGGCTGATGCATTTGATGAGCAGTGTGATTACCTGTTCAAGGCTGTTCTTGTTGGAGACTCAGGTGTTGGGAAGACAAATCTGATATCAAGGTTTGCAAAAGATGAGTTCAGGTTGGATTCCAAGCCCACCATAGGTGTTGAATTTGCCTACAGAAACATCAAAGTCAGAGACAAGCTCATCAAGACACAGATATGGGACACTGCCGGCCAAGAGAGGTTTAGGGCTATCACAAGCTCATACTACAGAGGAGCCTTGGGGGCAATGCTAGTGTATGACATAACCAAGCTAGCAACTTTTGTGAATGTGAGCAAATGGTTACATGAGTTAAGAGAGTTTGGAGGAGAAGACATGGTGGTTGTTCTGGTGGGAAACAAATCTGATTTGGGGCAATCAAGGGAAGTTGAGAGAGAAGAAGGAAAAGGGTTTGCAGAAAGAGAAGGGTTATGTTTCATGGAAACCTCTGCTCTGCAGAATCTGAATGTTGAGGAAGCATTCTTAGAAATGATCACTAAGATCCATGACATTATAAGCCACAAAAGTTTGGAAACCAAAATGAATGGTACAGCATTGAGTCTTCCTAATGGGAAGGAGATCCATATAGCTGATGAAGTCACTGCTACTAAACAACCTAATTGTTGTTCATCACTATAG 660 0.4242 MAVADAFDEQCDYLFKAVLVGDSGVGKTNLISRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKTQIWDTAGQERFRAITSSYYRGALGAMLVYDITKLATFVNVSKWLHELREFGGEDMVVVLVGNKSDLGQSREVEREEGKGFAEREGLCFMETSALQNLNVEEAFLEMITKIHDIISHKSLETKMNGTALSLPNGKEIHIADEVTATKQPNCCSSL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00294 219 ProSiteProfiles small GTPase Rab1 family profile. 10 216 - -
Cca08g00294 219 SMART ran_sub_2 20 216 - -
Cca08g00294 219 PRINTS Transforming protein P21 ras signature 15 36 - -
Cca08g00294 219 PRINTS Transforming protein P21 ras signature 38 54 - -
Cca08g00294 219 PRINTS Transforming protein P21 ras signature 56 78 - -
Cca08g00294 219 PRINTS Transforming protein P21 ras signature 118 131 - -
Cca08g00294 219 PRINTS Transforming protein P21 ras signature 153 175 - -
Cca08g00294 219 CDD Rab11_like 12 176 - -
Cca08g00294 219 Gene3D - 7 216 IPR027417 -
Cca08g00294 219 Pfam Ras family 16 176 IPR001806 GO:0003924|GO:0005525
Cca08g00294 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 187 IPR027417 -
Cca08g00294 219 SMART rho_sub_3 17 178 IPR001806 GO:0003924|GO:0005525
Cca08g00294 219 TIGRFAM small_GTP: small GTP-binding protein domain 14 168 IPR005225 GO:0005525
Cca08g00294 219 ProSiteProfiles small GTPase Rho family profile. 8 176 - -
Cca08g00294 219 SMART rab_sub_5 15 178 - -
Cca08g00294 219 ProSiteProfiles small GTPase Ras family profile. 9 219 IPR001806 GO:0003924|GO:0005525
Cca08g00294 219 SMART ras_sub_4 12 178 - -
Cca08g00294 219 PANTHER DRAB5-RELATED 4 218 - -
Cca08g00294 219 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 4 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00294 Cca-Chr8 4252979 4257806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00294 K07976 - gmx:100815793 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00294 08 4252979 4257806 Cca08g00294 08 4252979 4257806 ECH