Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00261 ATGGCTACATCATCGGATTCTGATAATGAAATCATCGGAACACGGGCAAAGCTCTTTGGACATGAAAAACCGATTCATCAAGTTCTTGGAGGAGGAAAAGTGGCAGATATGTTATTATGGAGGAACAGAAATGTATCAGCTGCACTTTTGGTTGCAATGACGGTGATATGGCTTCTATTTGAGATCTTTGAGTACAATTTCGTGACTCTCCTATGTCACATTTCCATCACCACAATGCTTGTACTATTCATATGGTCCACTGTTGCAGATATATTAAAATGGAAAGGTCCCCAGATCCCGGACATAATTTTACAGGAATCTTTCTTCCATGATCTTGCTTCCATCCTCCATAAAAGATTTAATCAGTTATTGCCAATGCTTCTCCATATTTCATCTGGAATAGACCTCCCATTCTTTCTTCTGATCATTGTTTCCCTCTATATTCTGTCAGTGATTGGAAGCTACTTCAACTTTGTGAATCTGCTATATATTGGTTTCCTGTGCATGCAAACGTTGCCAATTGTGTATGAACGGTATGAGGAAGAAATCAACAATCTGGTCGGTGATATGATAATAGTTCTGAGGAAAAGCTATAGGAGCTTTAACAAGAACTACCTCAACAAAATTCCCAGAGGACCAGTGAAGCAAAAGAAAACCCGATAA 663 0.3891 MATSSDSDNEIIGTRAKLFGHEKPIHQVLGGGKVADMLLWRNRNVSAALLVAMTVIWLLFEIFEYNFVTLLCHISITTMLVLFIWSTVADILKWKGPQIPDIILQESFFHDLASILHKRFNQLLPMLLHISSGIDLPFFLLIIVSLYILSVIGSYFNFVNLLYIGFLCMQTLPIVYERYEEEINNLVGDMIIVLRKSYRSFNKNYLNKIPRGPVKQKKTR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00261 220 PANTHER RETICULON 3 218 IPR045064 GO:0009617
Cca08g00261 220 Pfam Reticulon 34 188 IPR003388 -
Cca08g00261 220 PANTHER RETICULON-LIKE PROTEIN B9 3 218 - -
Cca08g00261 220 ProSiteProfiles Reticulon domain profile. 34 220 IPR003388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00261 Cca-Chr8 3708897 3711808 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00261 - - gmx:100809028 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00261 08 3708897 3711808 Cca08g00261 08 3708897 3711808 ECH