Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00259 ATGAAGGCATCACACATTGCTTTGTGTACTTTGGTGGTGCTGCTTGTGGCTCAAGTTCAAGTGTCAATGGCAGTAACATGCAGCCCAGTACAGTTGAGTTCATGTGTGAGTGCAATAACCTCTTCAACCCCTCCATCAAACCTGTGCTGCTCCAAGATCAAGGAACAGAAACCATGCCTTTGCCAATACCTCAAGAACCCTAATCTCAAGAAGTTTGTTGACTCCCCCAATGCAAGGAGAGTTGCTAGAACATGTGGAACTCCCTTTCCAAGGTGCTAA 279 0.4624 MKASHIALCTLVVLLVAQVQVSMAVTCSPVQLSSCVSAITSSTPPSNLCCSKIKEQKPCLCQYLKNPNLKKFVDSPNARRVARTCGTPFPRC 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00259 92 Gene3D - 25 92 IPR036312 -
Cca08g00259 92 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 92 IPR036312 -
Cca08g00259 92 SMART aai_6 27 92 IPR016140 -
Cca08g00259 92 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 1 92 - -
Cca08g00259 92 Pfam Probable lipid transfer 17 87 IPR016140 -
Cca08g00259 92 CDD nsLTP2 27 92 IPR033872 GO:0006869
Cca08g00259 92 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 1 92 IPR033872 GO:0006869
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00259 Cca-Chr8 3665825 3666590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00259 1 92 Acyl Lipid Metabolism Gene Families AT3G18280 54.839 7.40e-33 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00259 - - gmx:113002176 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00259 08 3665825 3666590 Cca08g00259 08 3665825 3666590 ECH