Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00258 ATGACCATGAAAACACCTGGAACACCAGCATCGAAGATAGATAGGACACCGGTATCAACCCCGGGAGGGGCAAGAGCTAGGGAAGAGAAGATTGTGGTCACAGTTAGGCTAAGGCCTTTGAACAGAAGGGAGCAATTGGCGAAAGATCAGGTTGCATGGGACTGCATCAATGATTATACTATCGTGTATAAACCACCGACACATGATCGTGCTTCTCAACCAGCATCATTTACTTTTGATAAAGTTTTTGGTCCTGCCTCCTTGACTGAGGCGGTGTATGAAGAAGGAGTAAAGAAAGTCGCATTATCTGCATTAACAGGCATTAATGCTACAGTTTTTGCTTATGGACAAACTAGCAGTGGAAAGACATACACAATGAGAGGAATAACTGAGAAGGCTGTGAATGATATTTACGAGCATATTATGAATACTCCCGAAAGAGATTTCACTATAAGAATTTCTGGACTAGAAATATACAATGAGAATGTAAGGGACTTGTTAAATTCAGAATCTGGTCGCAGTTTGAAGCTTCTTGATGATCCCGAGAAAGGTACTGTGGTTGAGAAATTAGTAGAAGAAACAGCGAAAGATGATCAACATTTAAGACATTTGATCTCCATTTGTGAAGCTCAAAGGCAGGTTGGTGAAACTGCTCTAAATGATAACAGTTCGCGGTCTCACCAGATAATAAGACTGACAATTCAAAGCACTCTTCGTGAAAATGCAGATTGTGTGAAATCTTTTGTCGCAACCTTGAACTTTGTCGATCTAGCTGGAAGTGAGAGGGCTGCACAGACACATGCAGATGGCACTAGGCTGAAAGAAGGCTGTCATATTAACCTTAGCTTGATGACTCTTACAACTGTTATCAGGAAGCTGAGTGTTGGAAAAAGAAGTGGTCATATACCTTACAGAGATTCAAAGCTCACACGTATTTTGCAACATTCCCTTGGTGGGAATGCACGCACTGCCATTGTTTGTACTTTGAGTCCAGCACTGAGCCATGTAGAGCAATCACGAAACACTCTCTTGTTTGCTACCCGGGCAAAGGAAGTAACAAATAACGCTCAAGTTAACGTGGTTGTATCAGACAAGCAGCTCGTTAAACATTTACAAAAGGAAGTTGCAAGGCTGGAGGCAGTGTTGCGCACTCCTGATCCATCTAAAGAAAAGGATTGGAAGATTCAACAGATGGAAATGGAAATCGAAGAGCTAAAACGCCAGAGAGATCTTGCACAAATTCAGGTGGATGAGTTACGCAGAAAGCTTCAGGATGACCAAAAGGTCTCAAACCCAGTTGAATCACCACATCTGCCGGTCAAAAAGTGCCTGTCATTCACTGGTGCACTATCATCGCTAAAACCAGAGCTAGGATGTGAGAGAGTAAGAAGCTCAACATTAAGACAGTCCATTAGGCAATCTTCTACTGCTCCTTTTACCCTTATGCATGAAATTCGCAAACTTGAGCACCTCCAAGAGCAGCTGGGTGAAGAAGCCAATAGAGCTTTGGAAGTATTACAAAAGGAAGTGGCATGTCATAGACTAGGTAACCAAGATGCAGCTGAGACAATTGCAAAGTTGCAAGCAGAAATAAGGGAAATGCGTTCTGTTAGGTCAACACCCAAGGATGTTGAAGTTGGAAGCATGGTTTCTGTCAACAAGAGTGTCAGTGCCAATCTCAAGGACGAGATTACCCGACTTCATTCACAAGGCAGCACCATTGCAAATCTTGAACAGCAGCTTGAAAATGTTCAAAGGTCCATAGACAAGTTGGTGATGTCTCTCCCGAACAACTTTCAACATTCACCCAGTGAAGCATCCCCTAAGAATAAAAAGGAACACAAAAGGAAAAAGTTGCTTCCTTTGTCTTCAAGCAATATCACCAATCGCCCAAACTTCCTAAGATCTCCCTGCTCACCTTTATCTACTACGCAACAAGTTTTGGAATCTGATATTGAAAATATAGCCCCTGAGAATGATGATCTCGTTTCAATTGATACTCTGCCTGAGTCCGAGAAGGAGACTCCATCAAAGAGTGAAGAAACTGGAGATGTTTCATCGAAGGAAAATCCTTCAGGTTATCGACGCTCTAGTTCAGTTAACATGAAGAAAATGCAGAAAATGTTTCAGAATGCAGCAGAGGAGAATGTAAGAAGTATAAGAGCATACGTCACAGAATTGAAAGAACGTGTGGCCAAACTGCAGTACCAAAAGCAGTTACTTGTTTGCCAGGTGCTTGAACTTGAAGCAAACGAAGCAAATGGCCACAACATAGACAACGAAGAGTACCCATGTGAACCAGAGGAACCCCAGGTTTCATGGCAAATAACATTTAAAGAGCAGCGGCAGCAGATCCTTGAATTGTGGGATCTATGTTATGTCTCCATTATTCACAGGACCCAGTTTTATTTGTTATTCAAGGGAGACCCAGCTGATCAAATATACATGGAAGTAGAACTAAGGAGATTGACATGGTTGCAAGAACACCTAGCAGAACTTGGGAATGCAAGCCCGGCTCCTCATGTTGGAGAAGAGCCTGCTATCTCACTGTCATCAAGTTTGAGAGCTTTGAAAAGAGAAAGGGAATTTCTGGCCAAGAGACTTACATCACGTTTGTCACTGGAGGAGAGGGAGATGTTATATATGAAATGGGATGTCCCTCTTGATGGGAAGCAGAGGAGGTTGCAATTTATCAGCAAGCTTTGGACTGATCCTCATGACCAAAACCATGTGCAGGAGAGTGCAGAAATTGTTGCAAAGCTTGTTGGTTTCCAGACAGGAGGCAACATGTCAAAGGAGATGTTTGAGCTGAACTTTGTACTTCCTTCTGATAAGAGGCCATGGTTAATGGGCTGGAACCCCATATCGAACTTTCTTAATTTGTAA 2886 0.4258 MTMKTPGTPASKIDRTPVSTPGGARAREEKIVVTVRLRPLNRREQLAKDQVAWDCINDYTIVYKPPTHDRASQPASFTFDKVFGPASLTEAVYEEGVKKVALSALTGINATVFAYGQTSSGKTYTMRGITEKAVNDIYEHIMNTPERDFTIRISGLEIYNENVRDLLNSESGRSLKLLDDPEKGTVVEKLVEETAKDDQHLRHLISICEAQRQVGETALNDNSSRSHQIIRLTIQSTLRENADCVKSFVATLNFVDLAGSERAAQTHADGTRLKEGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIVCTLSPALSHVEQSRNTLLFATRAKEVTNNAQVNVVVSDKQLVKHLQKEVARLEAVLRTPDPSKEKDWKIQQMEMEIEELKRQRDLAQIQVDELRRKLQDDQKVSNPVESPHLPVKKCLSFTGALSSLKPELGCERVRSSTLRQSIRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSTPKDVEVGSMVSVNKSVSANLKDEITRLHSQGSTIANLEQQLENVQRSIDKLVMSLPNNFQHSPSEASPKNKKEHKRKKLLPLSSSNITNRPNFLRSPCSPLSTTQQVLESDIENIAPENDDLVSIDTLPESEKETPSKSEETGDVSSKENPSGYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEANGHNIDNEEYPCEPEEPQVSWQITFKEQRQQILELWDLCYVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQEHLAELGNASPAPHVGEEPAISLSSSLRALKREREFLAKRLTSRLSLEEREMLYMKWDVPLDGKQRRLQFISKLWTDPHDQNHVQESAEIVAKLVGFQTGGNMSKEMFELNFVLPSDKRPWLMGWNPISNFLNL 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00258 961 PANTHER CENTROMERE PROTEIN E 14 960 - -
Cca08g00258 961 Gene3D Kinesin motor domain 23 383 IPR036961 -
Cca08g00258 961 MobiDBLite consensus disorder prediction 1 15 - -
Cca08g00258 961 Coils Coil 488 508 - -
Cca08g00258 961 Coils Coil 567 594 - -
Cca08g00258 961 ProSiteProfiles Kinesin motor domain profile. 30 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00258 961 MobiDBLite consensus disorder prediction 621 645 - -
Cca08g00258 961 Coils Coil 388 429 - -
Cca08g00258 961 MobiDBLite consensus disorder prediction 668 701 - -
Cca08g00258 961 PRINTS Kinesin heavy chain signature 107 128 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00258 961 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00258 961 PRINTS Kinesin heavy chain signature 251 269 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00258 961 PRINTS Kinesin heavy chain signature 302 323 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00258 961 Coils Coil 517 537 - -
Cca08g00258 961 Pfam Domain of unknown function (DUF3490) 778 941 IPR021881 -
Cca08g00258 961 MobiDBLite consensus disorder prediction 686 701 - -
Cca08g00258 961 PANTHER KINESIN-LIKE PROTEIN KIN-7A 14 960 - -
Cca08g00258 961 MobiDBLite consensus disorder prediction 597 645 - -
Cca08g00258 961 ProSitePatterns Kinesin motor domain signature. 250 261 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca08g00258 961 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g00258 961 SMART kinesin_4 28 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00258 961 MobiDBLite consensus disorder prediction 668 685 - -
Cca08g00258 961 CDD KISc_CENP_E 30 352 - -
Cca08g00258 961 Pfam Kinesin motor domain 36 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00258 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 385 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00258 Cca-Chr8 3658399 3663582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00258 28 427 Miscellaneous Gene Families AT5G06670 39.120 5.24e-81 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00258 K11498 - gmx:100775206 1787.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00258 08 3658399 3663582 Cca08g00258 08 3658399 3663582 ECH