Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00251 ATGCCTCCTCCTTCTTCCTTCATCAAGACCCTTTTCTTGTTCTTCCTCATCTTCACAACATATCTATCTAGTGATGCTGAAGGGTACACAACATGTGAACCTTTTAGCTGTGGGAAATTCAACAACATAAGCTTCCCATTTTGGAGAAGCGACCAACCAGAATATTGTGGTCATCCAAAGCTCAAGCTTGATTGCCAACAAGACAACGTGACAATTGACATGATGTCACATACGTTCTATGTTATTGATATTAAGCCAACATCTAAGGTTTTGAAGATTGCAAGCGTGGATTTATTGGATGACCCTTGTCCTAATGAGTACATCAGTTTCGAGTTGGATTTTGATTTCTTCAACTACACTTCCAACGATGGAAACTATACTTTGTTATATGACTGCAGTCCAAATCCATTAAAGTATAGTTTGAATCTCGATGATTTAAAACCATTTAGTTGCCCCATAGATAGTGGTTTTCAAGAAGCATTCTTTGTGTCAAGTAGTGATGTGGCTAATTTGATGGATCTGGTGTGCAATAAAAACATCAGTGTTAGTGTCCTAAGAGAGGCTGTGAAGGATACTTCGTTTGTGAAAGATGTTATAAAAGAAGGATTTGAGGTTTTGTGGAGTGGTGTGGATGAAGACCAATGTGATGGTTGCAAACAACATGGTGGGAGATGTGGACACAATGCCTCTGTGGATGAATTTATCTGCCTTTGTTATAATCAGCAATCTTATGGTGGGGGTTGTAGCAAAAGCTTAGCAAGGTCTCCATTAGcagcaccaacaacaacaactagaccaacaccTGCAAATTCGCTGCTACCTCCTAACTCTCTAATATTTCCAAAAAATTCTCCTCTGTCTCCACATGCTCCGAGTATGTATTCTTCCTTCTCTTGA 897 0.379 MPPPSSFIKTLFLFFLIFTTYLSSDAEGYTTCEPFSCGKFNNISFPFWRSDQPEYCGHPKLKLDCQQDNVTIDMMSHTFYVIDIKPTSKVLKIASVDLLDDPCPNEYISFELDFDFFNYTSNDGNYTLLYDCSPNPLKYSLNLDDLKPFSCPIDSGFQEAFFVSSSDVANLMDLVCNKNISVSVLREAVKDTSFVKDVIKEGFEVLWSGVDEDQCDGCKQHGGRCGHNASVDEFICLCYNQQSYGGGCSKSLARSPLAAPTTTTRPTPANSLLPPNSLIFPKNSPLSPHAPSMYSSFS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00251 298 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Cca08g00251 298 PANTHER OS01G0690200 PROTEIN 9 245 - -
Cca08g00251 298 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN 9 245 - -
Cca08g00251 298 Pfam Wall-associated receptor kinase C-terminal 169 240 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00251 Cca-Chr8 3567881 3569150 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00251 11 241 Receptor kinase-like Gene Family AT5G38260 26.639 5.25e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00251 - - gmx:102665158 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00251 08 3567881 3569150 Cca08g00251 08 3567881 3569150 ECH