Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00243 ATGAAGAACAAGGAGCAACAAGACAAAAGTGCATCCTCATATCTGAAACTCTTCAGTGCTCAATTAGACCTTCTCAGCTTCATTTCCCATGCTCTAGTATTTGGGTGTGGTTTACTCATTGGTATCTCACTCATTTTCTTTGTCAAGAACTTCTCCCTCACCAACTTTCAAATCCAACAATTCCCCCTCTTATCATCCAATAGCCTCATGATGAGATCACCACCTTTCTCTCCCTCTCCCGAGTTTCCTCCAATCTCCTCCAACATCTCATTATTAATATCGAATAACCAAACAAAAAATGAATCTGGGTACGTCGAGGAATTAGTCTCTCACCATCAGATATCAGATACTCCATGTTCATCCAAAGAAAATAACCAAACCAAACCTTCTTCTGATGATGATTCTCCCTTGATAAGCAAAAGGGTAACGACCAACTTCACCAGAATTGGGTTGAGGGAATTCTTGGAGCCCCCCATGGCCATGCATGATATGAGTGATGAAGAGTTGTTGTGGAGAGCCTCCATGGTTCACATGGTTCGTAAACTGCCATTCAAACAGACACCAAAGGTTGCATTTATGTTTCTGACAAAAGGTGCTGTGCTATTGGCTCCTCTATGGGAAAGATTCTTCAAAGGAAATGAAGGGTTGTATTCTATCTACGTCCATTCTCACCCTTCTTTCGATGGAACAGTGCCTGAAAGCTCTGTGTTTCATGGCCGCAATATCCCCAGCAAGGAGGTAAAGTGGGGTGAGAATAGCATGATAGAGGCAGAGAGACGCCTACTAGCCAATGCACTCCTTGATTACTCCAACCAACGTTTTGTGTTACTCTCAGAGTCATGCATCCCTTTGTTTAATTTCTCCACAATCTACACTTACCTAATGGACTCAACCGAAACCTTTGTGGAGGCCTATGATCTGCCAGGTGACGTGGGCCGTGGCAGGTATAGCCCCAAAATGAGGCCCCAAATTACACTCTCACAATGGAGAAAGGGCTCCCAATGGTTTCAAATAAACCGTTTTCTTGCCCTACAAATAGTCTCTGACGATCGTTATTTCCCAGTGTTCCAAAAGCACTGCAAACCTAGTTGCTATAGTGATGAACACTACTTGCCAACATTTGTGAGTATCAAATTTTGGAAGAAGAACTCTAACAGGACTTTGACATGGGTTGATTGGAAAAAGGGTGGAGCTCATCCTTCTAGGTATAACAGATATGATGTGACTTATGAATTTTTGAACAAGTTAAGGTATGGAAGCTCTTGTGAGTACAATGGACATGCCACCAATGTTTGTCATTTGTTTGCTAGGAAATTCACACCTCATGCTTTGGATAGACTCCTGAGATTTGCTCCAAAGCTCATGCAATTCAATTGA 1377 0.4248 MKNKEQQDKSASSYLKLFSAQLDLLSFISHALVFGCGLLIGISLIFFVKNFSLTNFQIQQFPLLSSNSLMMRSPPFSPSPEFPPISSNISLLISNNQTKNESGYVEELVSHHQISDTPCSSKENNQTKPSSDDDSPLISKRVTTNFTRIGLREFLEPPMAMHDMSDEELLWRASMVHMVRKLPFKQTPKVAFMFLTKGAVLLAPLWERFFKGNEGLYSIYVHSHPSFDGTVPESSVFHGRNIPSKEVKWGENSMIEAERRLLANALLDYSNQRFVLLSESCIPLFNFSTIYTYLMDSTETFVEAYDLPGDVGRGRYSPKMRPQITLSQWRKGSQWFQINRFLALQIVSDDRYFPVFQKHCKPSCYSDEHYLPTFVSIKFWKKNSNRTLTWVDWKKGGAHPSRYNRYDVTYEFLNKLRYGSSCEYNGHATNVCHLFARKFTPHALDRLLRFAPKLMQFN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00243 458 Pfam Core-2/I-Branching enzyme 190 416 IPR003406 GO:0016020|GO:0016757
Cca08g00243 458 PANTHER CORE-2/I-BRANCHING ENZYME 5 457 - -
Cca08g00243 458 MobiDBLite consensus disorder prediction 115 138 - -
Cca08g00243 458 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 5 457 IPR044174 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00243 Cca-Chr8 3400885 3405658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00243 - - ccaj:109798022 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00243 08 3400885 3405658 Cca09g02715 09 52834861 52838786 ECH
Cca08g00243 08 3400885 3405658 Cca08g00243 08 3400885 3405658 ECH
Cca09g02715 09 52834861 52838786 Cca08g00243 08 3400885 3405658 PCT