Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00210 ATGGCTATGGTGGACCAGCCTCTGTATCCGATTGCCGTTTTGATCGACGAGTTGAAGAACGAGGACATTCAGCTGCGCCTGAACTCGATCCGGAGGCTCTCCACGATCGCGCGCGCGCTCGGCGAGGAGAGGACGCGGAAGGAGCTGATTCCGTTCCTCAGCGAGAACAACGACGATGACGACGAAGTGCTTCTCGCCATGGCTGAGGAACTCGGCGTCTTCATTCCCTACGTCGGAGGCGCCGACCACGCCAACGTGCTTCTTCCTCCCTTGGAAACGCTTTGCACCGTTGAGGAAACCTGCGTCAGAGACAAAGCGGTGGAGTCGCTCTGCAGAATTGGAGGTCAGATGAGGGAGCATGACTTGGTTGAACACTTCATTCCCTTAGTTAAGAGGCTGGCTGCTGGTGAGTGGTTCACGGCACGGGTTTCGTCATGTGGTTTGTTTCATATTGCCTACCCAAGTGCGCCAGAGGCGGTGAGGACTGAACTGAGAGCCATATATGCTCAGCTGTGTCAAGATGATATGCCCATGGTTAGGAGGTCTGCTGCCACAAATTTGGGAAAGTTTGCTGCTACTGTTGAAGCTCCTCACGTGAAATCTGACATCATGTCTATGTTTGAGGATCTCACGCAGGATGATCAAGATTCTGTTCGGCTACTTGCAGTTGAGGGTTGTGCAGCTCTTGGAAAACTGTTGGAACCTCAAGATTGTGTGGCACATATTCTTCCTGTCATAGTCAACTTTTCTCAGGATAAGTCATGGCGTGTTCGTTACATGGTTGCAAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGACCCCACCAGGTCAGAATTGGTTCCCGCATATGTTCGGCTGCTGCGCGATAATGAAGCTGAAGTACGTATTGCTGCTGCTGGAAAAGTAACTAAGTTCTCTCGTATATTAAATCCTGAACTTGCCATTCAGCATATTCTACCATGTGTGAAGGATTTATCAACAGATTCATCTCAACATGTTCGTTCTGCATTGGCATCTGTTATAATGGGAATGGCACCAGTGTTAGGGAAGGATGCAACAATCGAGCAACTTCTGCCTATTTTCCTCTCTCTTTTAAAAGATGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGGTTATCGGTATCGATTTGTTATCTCAATCTCTGTTGCCAGCTATAGTTGAGCTTGCTGAGGATCGACACTGGAGAGTTCGACTTGCAATCATAGAATATATACCCTTGCTGGCGAGTCAGTTGGGCGTAGGTTTTTTTGATGATAAGCTTGGAGCTCTCTGCATGCAATGGCTAAAGGACAAGGTATACTCAATCCGCGATGCAGCTGCTAATAACATCAAACGCTTAGCGGAAGAATTTGGACCAGATTGGGCAATGCAGCACATTATTCCCCAGGTTTTGGACATGGTTACTGATCCCCACTATCTGTATCGAATGACAATCCTGCAAGCAATTTCTCTACTAGCTCCTGTTCTGGGCTCGGAGATTACTACTTCAAAACTTCTCCCTCTGGTCATTAATGCATCAAAAGATAGGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATTCCAATTGTTGATCATTCTGTTGTTGAGAATACTATCCGTCCTTGTCTGGTTGAGCTCAGTGAGGATCCAGATGTTGATGTTAGGTTTTTCGCATCTCAAGCGCTACAATCTAGTGATCAAGTCAAGATGTCTAGCTAG 1764 0.4688 MAMVDQPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGADHANVLLPPLETLCTVEETCVRDKAVESLCRIGGQMREHDLVEHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEAVRTELRAIYAQLCQDDMPMVRRSAATNLGKFAATVEAPHVKSDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYVRLLRDNEAEVRIAAAGKVTKFSRILNPELAIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNIKRLAEEFGPDWAMQHIIPQVLDMVTDPHYLYRMTILQAISLLAPVLGSEITTSKLLPLVINASKDRVPNIKFNVAKVLQSLIPIVDHSVVENTIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Cca08g00210 587 SUPERFAMILY ARM repeat 8 579 IPR016024 -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Cca08g00210 587 Pfam HEAT repeats 361 460 - -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Cca08g00210 587 Gene3D - 2 579 IPR011989 -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Cca08g00210 587 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 554 587 IPR021133 -
Cca08g00210 587 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 1 587 - -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Cca08g00210 587 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Cca08g00210 587 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT A 1 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00210 Cca-Chr8 2906652 2918633 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00210 K03456 - gmx:100799440 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00210 08 2906652 2918633 Cca08g00210 08 2906652 2918633 ECH