Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00208 ATGGAATCTGATCAATCACCTCAGATCAAGGGCGTTGTTATAATCTCCCTTCCACCCCCAGATAACCCTTCTTTGGGCAAAACCATCACTGCTTTCACTTTCTCTAACCCTTCTCCTCAACCTTCTCCACAGCAACACCAAAGTAACCAAACACACACAATTACTCACAACACTGACCCTCCACTTCAGTCCTACCCATCAAATCCTGACCTTACTTTTTCATTCACAAGACTCTTCCACAGCACCCCAGTGAAGCTTTTTTCGTTTTTTGGTGTTCTTCTCTTTGCCCTTTTTCTCTACGGTTCTGTTTCTTCGACCACCACTCAGGAACTGCGTGGACCCAAGAAAGATGATGGCACGCCGAGTTCCTTTTTGTTCCCTTTGTTTCCCAAATTTGGTGTTTTGGGGCAGAAGGATGTGAAGCTTCAACTGCGGAAGGTTGTTCAAAAAGAGAAGCTTTTCACCCGAAAAAACGATGTCGTTGGTTCTGGGGCTGTGGCCGTTGACTCATCTTCAGTTTTTCCAGTCAGTGGCAACGTGTATCCAGACGGGTTGTATTTCACTATTTTGCGCGTTGGAAATCCTCCAAAAAGTTACTTCCTTGACGTGGATACAGGGAGTGACTTAACTTGGATGCAATGTGATGCTCCATGCAGAAGTTGTGGGAAGGGAGCACATGTCCTGTACAAGCCAACAAGATCCAATGTAGTATCATCTGTGGACGCCCTTTGCATGGATGTTCAGAAAAATCAGAAGAATGGACATCAAGGAATATTGCAACAGTGTGACTATGAAATTCAATATGCAGATCATAGTTCTTCCTTGGGGGTTCTTATAAGAGACGAGCTTCATCTTGTAACTACTAATGGATCCAAAACCAAGCTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTGCTTTTGAACACATTGGCTAAGACAGATGGAATCATGGGACTGAGCAGGGCACAAGTCAGCCTACCCTACCAGTTAGCAAGCAAAGGGCTTATTAAGAATGTGGTTGGTCATTGCCTAAGCAATGATGATGTTGGTGGTGGATACATGTTCTTGGGTGATGATTTTGTGCCATATTGGGGCATGACTTGGGTACCCATGGCCTATACCCATACTTCGGATTTATACCAAACTGAGATTCTTGGAATAAATTATGGTAATCGCCCACTCAGATTTGATGGCCAAAGCAAAGTTGGAAAGGTGATTTTTGATAGTGGCAGCTCTTACACATATTTCACAAAAGAGGCATATTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGGTTGGGACTCGTTCAAGATGATTCAGATACTACTTTACCCATTTGTTGGCAAGCTAATTTCCCAATCAAATCTGTCAAAGATGTAAAGGATTACTTCAAGACCTTAACTCTTCGGTTTGGAAGCAAGTGGTGGATTTTGTCCACATTGTTTCAGATACCTCCAGAGGGTTACTTGATCATCAGTAACAAAGGCCATGTGTGCTTGGGTATCCTTGACGGTAGTAATGTAAATGATGGATCCTCAATTATACTTGGAGACATTTCATTGAGAGGATATTCGGTTGTTTATGATAATGCGAAGCAGAAAATTGGTTGGAAGCGAGCAGATTGTGACATGCCAAGCAGAAGATTGAGAAAGAAAAATAATTTCATCCCTGACAGCATGCTATAA 1698 0.424 MESDQSPQIKGVVIISLPPPDNPSLGKTITAFTFSNPSPQPSPQQHQSNQTHTITHNTDPPLQSYPSNPDLTFSFTRLFHSTPVKLFSFFGVLLFALFLYGSVSSTTTQELRGPKKDDGTPSSFLFPLFPKFGVLGQKDVKLQLRKVVQKEKLFTRKNDVVGSGAVAVDSSSVFPVSGNVYPDGLYFTILRVGNPPKSYFLDVDTGSDLTWMQCDAPCRSCGKGAHVLYKPTRSNVVSSVDALCMDVQKNQKNGHQGILQQCDYEIQYADHSSSLGVLIRDELHLVTTNGSKTKLNFVFGCGYDQEGLLLNTLAKTDGIMGLSRAQVSLPYQLASKGLIKNVVGHCLSNDDVGGGYMFLGDDFVPYWGMTWVPMAYTHTSDLYQTEILGINYGNRPLRFDGQSKVGKVIFDSGSSYTYFTKEAYLDLVASLNEVSGLGLVQDDSDTTLPICWQANFPIKSVKDVKDYFKTLTLRFGSKWWILSTLFQIPPEGYLIISNKGHVCLGILDGSNVNDGSSIILGDISLRGYSVVYDNAKQKIGWKRADCDMPSRRLRKKNNFIPDSML 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00208 565 PANTHER ASPARTYL PROTEASE APCB1 16 550 - -
Cca08g00208 565 SUPERFAMILY Acid proteases 177 547 IPR021109 -
Cca08g00208 565 MobiDBLite consensus disorder prediction 26 60 - -
Cca08g00208 565 Pfam Xylanase inhibitor N-terminal 186 361 IPR032861 -
Cca08g00208 565 Gene3D Acid Proteases 165 361 IPR021109 -
Cca08g00208 565 Pfam Xylanase inhibitor C-terminal 388 542 IPR032799 -
Cca08g00208 565 Gene3D Acid Proteases 367 547 IPR021109 -
Cca08g00208 565 PANTHER ASPARTYL PROTEASES 16 550 IPR001461 GO:0004190|GO:0006508
Cca08g00208 565 MobiDBLite consensus disorder prediction 1 60 - -
Cca08g00208 565 ProSiteProfiles Peptidase family A1 domain profile. 186 542 IPR033121 -
Cca08g00208 565 PRINTS Pepsin (A1) aspartic protease family signature 192 212 IPR001461 GO:0004190|GO:0006508
Cca08g00208 565 PRINTS Pepsin (A1) aspartic protease family signature 408 419 IPR001461 GO:0004190|GO:0006508
Cca08g00208 565 PRINTS Pepsin (A1) aspartic protease family signature 518 533 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00208 Cca-Chr8 2897397 2902135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00208 168 547 Miscellaneous Gene Families AT1G77480 46.475 1.05e-110 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00208 - - gmx:100810687 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00208 08 2897397 2902135 Cca08g00208 08 2897397 2902135 ECH