Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00198 ATGGAGGCTCCGCCAAGTGGATCCGGATCCGGACCCGAGAGAGACAAATCCACCGCTCCGACGTCTTCTCCGATCTCCGTCGTCTCCGCCTTCTGGAAAGATTTTGAGTTGGAAAAGGAGAAATCTATATTGGACGAGCAAGGGCTTCGAATTGCAGAGAATCAGGAAAACAGTCAGAAGAATCGGCGCAAGCTTGCAGAGAACACTAGAGACTTCAGAAAGGCTTCGCCAGAGGATAAGTTAAGTTTGTTCAGTGCCTTGCTTAAGGGCTATCAGGAAGAGGTTGATAATCTTACTAAGAGAGCTAAGTTTGGAGAAAATGCTTTTCTCAACATCTATCAAAAGCTCTATGAAGCTCCGGATCCTTATCCTGCTATTGCATCTATTGCTGAGCAAGATCTTAAGTTATCTGAGCTTGAATCTGAAAACCGGAAAATGAAAGTTGAGCTTGAGGAGTTCAGAACAGAGGCAACTCACCTGAAGAATCAGCAGGCTACAATACGAAGACTTGAAGAAAGAAATAGGCAATTAGAGCAACAGATGGAAGAGAAAGTTAAAGAAATTGTGGAGATTAAGCAACGCAGTCTGGCAGAAGAGAACCAGAAAACATTGGAAGTTTTGAAAGAAAGGGAACAAGCACTTCAAGACCAGTTGCAGCATGCCAAAGACAGTGTTTCTAATATGCAGAAATTGCATGAAATTGCACAAAACCAGTTGTTTGAACTCCGAGCCCAATCTGAGGAAGAGAGGGCAGCTAAGCAATCAGAGGTTGGTCTTCTGATGGATGAAGTGGAACGTGCACAATCAATGCTTCTTAGTTTAGAAAGAGAGAAGGGGGTTCTCCGATCACAGTTACAAACAGCAAATGAAGAGACTGATATTAAGAAAAGAGATAATTTTGACTCAAATAGTGCGCTTGAGAATTCTTTAAATGTCAAAGAAAAGCAAATCTCTGAATTGAACATGGAACTACACAATATTGAAACAGTGTTATCAAATGAAAGGGAGGAACACATAAATGAAGTCAAGAAACTTACAGCAATGCTCAATGAGAAGGAGGCTTCCCTTGAGGAGATGAAGAAAGAACTTCAAGCAAGGCCAACAGAAAAAATGGTTGATGATCTCCGTAAGAAAGTGAAAATTTTGCAGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGAGGTGGCTACAAGTGGGGAAGAGATGAGCAAGATGGAGTCTCTTCTTCTTGATAAGAACCGTAAAATGGAACATGAACTAACACAGTTGAAGGTCACACTTACAGAGAAAACATCCTTACTGGAAACAGCTGAACAGAAGATAAAAGAACTTACAGCAAAGGTTAATGAACAACAAAAATTGATACAGAAGTTAGAAGATGATATATTGAAGGGATATGGTTCCAATTCAAAAGATCGTAAAGGGAACTTCCTTGATGATTGGGATCTTTCAGAAGCTGGTGGGGGTGAGGCTTCTGAGAATACAGACCAAAGGCAAGTATCCTTAGACCAAGATCAGAGCTCAATGCTTAAAGTAATTTGTAATCAAAGAGATCGGTTTAGGACCCGCTTGCGAGAGACAGAAGAGGAGATAAGGCAGTTGAAGGAGAAGATTGGGGTATTAACAGTGGAACTGGAAAAGAGCAAGGCTGATAATGTGAAACTATATGGGAAGATTCGATATGTACAAGATTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAGTATGCTGAAGATCTTGAAAGTGGTTTAACGTCAGATGTTGAATCTAAATACAAGAAGATATATGAGGATGATATAAATCCTTTTGCTGCATTCTCTAAAAAGGAAAGGGATCAAAGATACAAAGAGTTGGGATTCAGGGACAGAATTACGCTCAGCAGTGGACGTTTTCTCCTTGGTAACAAGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGCAATGGCCCAGAGGAATTCCTGGTTGGAGAGAAAAACGTCGATCTTCCTCGTGGACCATAG 2073 0.4096 MEAPPSGSGSGPERDKSTAPTSSPISVVSAFWKDFELEKEKSILDEQGLRIAENQENSQKNRRKLAENTRDFRKASPEDKLSLFSALLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAIASIAEQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEIKQRSLAEENQKTLEVLKEREQALQDQLQHAKDSVSNMQKLHEIAQNQLFELRAQSEEERAAKQSEVGLLMDEVERAQSMLLSLEREKGVLRSQLQTANEETDIKKRDNFDSNSALENSLNVKEKQISELNMELHNIETVLSNEREEHINEVKKLTAMLNEKEASLEEMKKELQARPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQLKVTLTEKTSLLETAEQKIKELTAKVNEQQKLIQKLEDDILKGYGSNSKDRKGNFLDDWDLSEAGGGEASENTDQRQVSLDQDQSSMLKVICNQRDRFRTRLRETEEEIRQLKEKIGVLTVELEKSKADNVKLYGKIRYVQDYNHEKVVSRGSKKYAEDLESGLTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSYLSNGPEEFLVGEKNVDLPRGP 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00198 690 Pfam CASP C terminal 438 667 IPR012955 GO:0006891|GO:0030173
Cca08g00198 690 Coils Coil 49 69 - -
Cca08g00198 690 Coils Coil 88 108 - -
Cca08g00198 690 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g00198 690 PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED 24 674 - -
Cca08g00198 690 Coils Coil 257 291 - -
Cca08g00198 690 MobiDBLite consensus disorder prediction 479 504 - -
Cca08g00198 690 Coils Coil 129 194 - -
Cca08g00198 690 PANTHER HOMEOBOX PROTEIN CUT 24 674 - -
Cca08g00198 690 Coils Coil 197 245 - -
Cca08g00198 690 Coils Coil 303 366 - -
Cca08g00198 690 Coils Coil 512 553 - -
Cca08g00198 690 Coils Coil 422 463 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00198 K09313 - gmx:100780863 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00198 08 2750004 2761436 Cca08g00198 08 2750004 2761436 ECH