Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00197 ATGGCTTCCAACCTTAGCCTACACCTCTCATTCCTAGTATCAACACTTTTCATAGTCACAACACTTTCCTCACACAAACACACCACTCTTCTCAATGTCACCTCCTCCCTCCACCAAGCCCACCAAATCCTCACCTCCACCCCAAACCTTCTAGAACAATCCACTCCCACAACCACACCCACACCCCACCTTCTACAATCTTCCACTTCCTTCTCCCTCCACCTCCACCCCAGAGAAACCCTCCTCAACTCCAACTCCCCCAACTACAAAACCCTAGTCCTCGCCCGACTCGCCCGCGACTCAGCCCGAGTCACCTCGCTCCACTTAAAGCTccaactcgccctcaccagcctcgccagatccgacctccacccgacccgacccgaAGACCTCTCCGCCCCAGTCTCCTCCGGCATCGGCCAGGGCAGCGGCGAGTACTTCTCACGCGTCGCCGTCGGCAACCCCCCGAAGCCCTTCTTCATGGTCATCGACACCGGCTCCGACGTCAACTGGCTCCAGTGCAAGCCCTGCTCCGACTGCTACCAACAAACCGACCCGATTTACGACCCGACAGCATCCTCCTCGTACGCGCCACTAACCTGCGACGCGCAACAGTGCCAAAACCTCGAAACGTCGGCGTGTAGAAACCAACGCTGCCTCTACCAAGTCTCCTACGGAGACGGATCCTTCACCGTAGGTGAATACGTAACCGAAACCGTTTCCCTCGGATCCGGGTCGGTTAACAGAGTCGCAATCGGGTGCGGACATGATAATGAGGGCCTCTTCGTCGGGGCCGCTGGGCTTCTTGGGCTCGGTGGTGGGCCTTTGTCATTAACCAACCAAATCAAAGCGACGTCGTTTTCCTATTGTTTAGTAGACCGCGACTCAGGGAAATCGTCCACACTCGAGTTCAACTCGCCTCGACCCAGTGACTCGGTCACTGCACAGTTAATCAAAAACCAGAAATTAAACACATTCTATTACATCAAACTCACCGGATTCAGCGTCGGCGGGGAAGCCATCTCCGTCCCGCCGGAGACTTTCGACGTTGACCAGTCCGGTGCCGGCGGCGTCATCGTTGATTCCGGCACCGCCATCACGCGGCTGAGGACCCAGGCCTACGAGGCCGTTCGCGACGCGTTTCGAAGGATGACGCAGAACTTGCGCTCCGCCGAGGGAGTGGCGCTGTTTGACACGTGCTACGACATGTCGTCGCTTCAGACCGTGCGTGTGCCGACGGTGGCGTTTCACTTTGGCGGTGGCCAGACGTGGAATTTGCCGGCGAAGAATTACTTGATTCCGGTGGACGGCGCCGGGACTTATTGCTTCGCGTTTGCGCCGACGTCGTCGCCGCTGTCGATTATTGGCAATGTGCAGCAGCAGGGGACACGTGTCAGCTTCGATCTAGCGAATTCTGTAGTGGGATTCTCACCCAATAAGTGCTAG 1446 0.5484 MASNLSLHLSFLVSTLFIVTTLSSHKHTTLLNVTSSLHQAHQILTSTPNLLEQSTPTTTPTPHLLQSSTSFSLHLHPRETLLNSNSPNYKTLVLARLARDSARVTSLHLKLQLALTSLARSDLHPTRPEDLSAPVSSGIGQGSGEYFSRVAVGNPPKPFFMVIDTGSDVNWLQCKPCSDCYQQTDPIYDPTASSSYAPLTCDAQQCQNLETSACRNQRCLYQVSYGDGSFTVGEYVTETVSLGSGSVNRVAIGCGHDNEGLFVGAAGLLGLGGGPLSLTNQIKATSFSYCLVDRDSGKSSTLEFNSPRPSDSVTAQLIKNQKLNTFYYIKLTGFSVGGEAISVPPETFDVDQSGAGGVIVDSGTAITRLRTQAYEAVRDAFRRMTQNLRSAEGVALFDTCYDMSSLQTVRVPTVAFHFGGGQTWNLPAKNYLIPVDGAGTYCFAFAPTSSPLSIIGNVQQQGTRVSFDLANSVVGFSPNKC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00197 481 PANTHER ASPARTYL PROTEASES 17 481 IPR001461 GO:0004190|GO:0006508
Cca08g00197 481 Gene3D Acid Proteases 119 304 IPR021109 -
Cca08g00197 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 358 369 IPR001969 GO:0004190|GO:0006508
Cca08g00197 481 Gene3D Acid Proteases 305 481 IPR021109 -
Cca08g00197 481 ProSiteProfiles Peptidase family A1 domain profile. 146 477 IPR033121 -
Cca08g00197 481 SUPERFAMILY Acid proteases 140 481 IPR021109 -
Cca08g00197 481 Pfam Xylanase inhibitor N-terminal 146 304 IPR032861 -
Cca08g00197 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 161 172 IPR001969 GO:0004190|GO:0006508
Cca08g00197 481 PANTHER PROTEIN ASPARTIC PROTEASE IN GUARD CELL 1 17 481 - -
Cca08g00197 481 Pfam Xylanase inhibitor C-terminal 327 477 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00197 Cca-Chr8 2740186 2742319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00197 144 481 Miscellaneous Gene Families AT1G77480 27.822 2.37e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00197 K22683 - gmx:100784849 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00197 08 2740186 2742319 Cca08g00197 08 2740186 2742319 ECH