Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00196 ATGGAAGCTGCATTATGCAGTGCACTTGCTCTTTCACCCAACCAAGTATTCAATGCATCAAATCCTGGAGATAAAAATTTTCCTTTGAAATATAGCAAAGATCGCAGTGTTGTAATGACAGTGGCAGCCACTGGAATTTTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCGACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACATAAGGAAATCAAGGAAAACATCCCCACCATACCGAGTTTTGCTGCACAACGACAACTACAACAAGAGAGAATATGTTGTGCAAGTGTTGATGAAGGTAATACCAGGAATGACAGTTGATAATGCAGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATCGTGTGTGCCCAAGTGGATGCAGAAGACCACTGCATGCAGTTAAGAGGAAACGGACTTCTGAGTTCAATTGAGCCTGCTGATGGTGGCTGTTGA 480 0.4396 MEAALCSALALSPNQVFNASNPGDKNFPLKYSKDRSVVMTVAATGILGKGGGLLERPTIETTSPGRESEFDIRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGLAVVIVCAQVDAEDHCMQLRGNGLLSSIEPADGGC 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00196 159 Pfam ATP-dependent Clp protease adaptor protein ClpS 77 145 IPR003769 GO:0030163
Cca08g00196 159 Gene3D - 76 154 IPR014719 -
Cca08g00196 159 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS 1 159 - -
Cca08g00196 159 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 1 159 IPR022935 GO:0006508
Cca08g00196 159 SUPERFAMILY ClpS-like 76 153 IPR014719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00196 Cca-Chr8 2733634 2736789 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00196 K06891 - gmx:100306117 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00196 08 2733634 2736789 Cca08g00196 08 2733634 2736789 ECH