Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00167 ATGCACAAATATTTTCCCCGAATTTccgccgaccggccgccctctgcggccaaccgcaacgtcgccgccgccgccaagcaaccgccgccTGGTGATGTCAGAGGGACCGACACGCCGCCGGAGAAGGTACCGCGCCGGGTTTTACCTTCGAATTTCGCGCCAAACGAGAATAACTCCGGTCCCTCACTCTTCGATAGCATCATGCACAAATTCGTTAAGGTCGATGATAACGAAAGAGTTTCTCAGAGGAGCCACTTATTGAATGCAAGTTTGCCTAAATCTTCTCCACCAGTGGGAATACGTGCTTATTTTGATCGTAAAGGGGTGAACAAGGAAGAAGCAGCTTTTCAACCTCTGGTGAAACCTCAAAATAATGCCGTGAATTTCAAGGAAAAGGCTAATCAGGAAAACATTGCGCTGGTTGAAACTGGCAATGATGTTGCTGGACCAGAAACCCCGGGGATGCAGCCTCTTGCTTCTCATGTGAAGAGAAGTCGCGAGGATGGATCCAAGTTTAGTTCCTTGCTGAATTCTGGCAAACGAGTCAGATTTCTCGAGGATTCAATGGCATTGCACATGACTAAGAAGGAAGCAGAAGTGGCAAACAAGTTTGAATGGCTTGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGTTGAATGATCCTTCGTATGACAGGACAACACTTTACATTCCTCCAGAAGTTTTGAGAAAAATGTCAGCATCACAGAAACAGTATTGGAGTGTCAAATGTAAATATATGGATGTTGTGCTATTTTTTAAAGTGGGAAAATTTTACGAGCTTTATGAAATGGATGCTGACATTGGCCATAAGGAGCTTGATTGGAAAATAACATTAAGTGGTGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGATGCTGTTCAAAAGCTGGTTGCACGTGGGTATAAGGTTGGACGAGTGGAGCAATTAGAGACATCTGAAGAAGCAAAAGCTAGAGGAGCTAACTCTGTTGTTAAGAGAGAATTAGTTCAGGTAATCACTCCATCAACCAATGTGGATGGTAATATTGGTCCTGATGCTGTTCACTTACTTGCAATAAAAGAGGAGAGCAATGGCTTGGATAATGGTTCAGTTGTGTATGGATTTGCTTTTGTTGATTGTGCTCGGCTTAGATTTTGGGTTGGCTCTATAGACGATGATGCATCCTGTTCTGCTTTAGGGGCTTTATTGATGCAAGTGTCACCCAAGGAAGTTGTGTATGAAAGTAGAGGGTTGTCCAAAGAAGCTCAAAAAGCACTTAGGAAGTTCTCCTTAAATGGTTCAGCAACAATGCAGTTCACTCCTGTGCAATCAACCACTGACTTGCTGAACTCTGAAATTAGGGATTTAGTTTACTCAAAGGGATACTTCAAAGGCTCGTCTCATTCACTTGATCATGTACTGAGCAATGTGATTCATCGTGAAATCACCTTGTCTGCTCTTGGTGGACTGATTGGTCATCTGGATAGATTGATGTTAGATGACATCCTACAGAATGGGGATTTATATCCATACCAAGTTTATAAGGGTTGCCTCAAAATGGATGGTCCAACAATGATAAATCTAGAACTCTTTGTCAATAATGAGGATGGTGACAAATCAGGTTCATTGTACAATTGTCTTGACAAATGTGTAACTTCATCTGGAAAGCGTCTTCTTAGGAACTGGATCTGCTGTCCATTAATAGATGCTGAAATAATTAACAACAGGCTTGATGTAGTGGATGACCTAATGGCTAACCCTGAGACTCTGTCACATATTGCTCAACATCTTCGCAAGCTTCCAGACTTGGAACATTTGCTTGGCCGAATTAAGTCCAGCCTTCAATTATCAGGCCCTCACTTACTGCCATTGTTGGGAAAGAAAATATTGAAGCAGAGGGTGAAAGTGTTTGGATCACTTGTGAAGGGCCTTCGGACTGCTTTGAGTTTGTTGCTTCTTTTACAGAAAGAGCAGCCTTTAATATCATCTTTGACCAGAGTTTTTAAACTTCCAATTCTGACTGGTAGTAATGGGCTCGATCAATTTCTTGCTCAGTTTGAAGCAGCTGTAGATAGTGACTTCCCAAATTACCAGAATCATGATGTTACAGATTCAGATGCTGAAATACTCACAATACTTGCTGAATTATTTTTGGAGAAAGTTGCTCAGTGGTTTGAAGTTGTTCACGCCATCAATTGCATTGATGTATTAAGATCTTTTGCTGTTACTTCTAGCTTTTCCTCTGGAACTATGTCTAGGCCAGTCATAATGGCATCAAAAGCTACAAGTAAAGACAATGGAGGAACTGTGCTCAAGGTGAAGGGACTATGGCATCCATTTGCCCTTGGAGATAGTGGATGTTTGCCTGTCCCCAACGACATAGTCCTTGGTGAGAATGAAGATGGGCCTCATCCTCGCACTTTGCTTCTCACTGGACCAAACATGGGTGGAAAGTCAACACTTCTGCGTGCCACGTGTCTAGCTGTTATTATGGCCCAGCTAGGCTGTTATGTGCCATGTGAAAGTTGCGTTCTCTCAGTTGTTGATATCATCTTCACCCGACTTGGAGCAAAAGACAGAATCATGACAGGCGAGAGTACCTTCTTTATTGAGTGTACAGAAACTGCATCGGTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACCAGCACTTTTGATGGCTATGCGATTGCATATGCAGTATTCCGGCATCTGATTGAAAAGGTTAACTGTCGCATGCTATTTGCCACACACTACCATCCGCTGACGAAAGAGTTTGGGTCTCATCCACGCGTAACACTGCAACACATGGCTTGCGCTTTCAAGTCAAAATCTGATACCTATTCCATGCGTGATCAGGAACTAGTTTTCCTATACCGGCTTGCCTCCGGAGCATGTCCAGAGAGCTATGGGTTGCAAGTTGCCCTCATGGCTGGAATCCCAGAAAAAACGGTAAACGTTGCTTCTAAGGCCAGCCAACACATGAAAAAATCAATTGGACAAAGTTTTAGTTCAAGCGAACAGAGATCAGAGTTCTCAACCCTTCACGAAGAATGGTTAAAGACCTTGGTGTCCATCTCACGAATAGAGGATTGTAGCTCTATTGATGAAGACGTTTTAGACACGTTATTCTGTGTGTGGTGCGAACTTAAAACCTCATTTATATCAGGAAAGTAG 3222 0.4174 MHKYFPRISADRPPSAANRNVAAAAKQPPPGDVRGTDTPPEKVPRRVLPSNFAPNENNSGPSLFDSIMHKFVKVDDNERVSQRSHLLNASLPKSSPPVGIRAYFDRKGVNKEEAAFQPLVKPQNNAVNFKEKANQENIALVETGNDVAGPETPGMQPLASHVKRSREDGSKFSSLLNSGKRVRFLEDSMALHMTKKEAEVANKFEWLDPSRIRDANGRRLNDPSYDRTTLYIPPEVLRKMSASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDADIGHKELDWKITLSGVGKCRQVGISESGIDDAVQKLVARGYKVGRVEQLETSEEAKARGANSVVKRELVQVITPSTNVDGNIGPDAVHLLAIKEESNGLDNGSVVYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPKEVVYESRGLSKEAQKALRKFSLNGSATMQFTPVQSTTDLLNSEIRDLVYSKGYFKGSSHSLDHVLSNVIHREITLSALGGLIGHLDRLMLDDILQNGDLYPYQVYKGCLKMDGPTMINLELFVNNEDGDKSGSLYNCLDKCVTSSGKRLLRNWICCPLIDAEIINNRLDVVDDLMANPETLSHIAQHLRKLPDLEHLLGRIKSSLQLSGPHLLPLLGKKILKQRVKVFGSLVKGLRTALSLLLLLQKEQPLISSLTRVFKLPILTGSNGLDQFLAQFEAAVDSDFPNYQNHDVTDSDAEILTILAELFLEKVAQWFEVVHAINCIDVLRSFAVTSSFSSGTMSRPVIMASKATSKDNGGTVLKVKGLWHPFALGDSGCLPVPNDIVLGENEDGPHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCESCVLSVVDIIFTRLGAKDRIMTGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRMLFATHYHPLTKEFGSHPRVTLQHMACAFKSKSDTYSMRDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNVASKASQHMKKSIGQSFSSSEQRSEFSTLHEEWLKTLVSISRIEDCSSIDEDVLDTLFCVWCELKTSFISGK 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00167 1073 Gene3D MutS, connector domain 361 526 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 MobiDBLite consensus disorder prediction 1 62 - -
Cca08g00167 1073 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 226 1065 - -
Cca08g00167 1073 ProSitePatterns DNA mismatch repair proteins mutS family signature. 893 909 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 SUPERFAMILY DNA repair protein MutS, domain III 528 752 IPR036187 -
Cca08g00167 1073 Pfam MutS domain II 363 507 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 SMART DNAend 545 791 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 Gene3D - 769 1052 IPR027417 -
Cca08g00167 1073 CDD ABC_MSH6_euk 779 1003 - -
Cca08g00167 1073 Pfam MutS domain I 243 353 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 Pfam MutS domain III 531 748 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 SMART mutATP5 812 1008 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 PIRSF Msh6 101 707 IPR017261 GO:0006298|GO:0030983
Cca08g00167 1073 PIRSF Msh6 703 1056 IPR017261 GO:0006298|GO:0030983
Cca08g00167 1073 Gene3D DNA repair protein MutS, domain I 199 359 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 1011 IPR027417 -
Cca08g00167 1073 SUPERFAMILY DNA repair protein MutS, domain II 380 538 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 Pfam MutS domain V 816 1010 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca08g00167 1073 Gene3D - 527 755 - -
Cca08g00167 1073 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 226 1065 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cca08g00167 1073 SUPERFAMILY DNA repair protein MutS, domain I 229 350 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00167 Cca-Chr8 2327284 2335922 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00167 K08737 - gmx:100818859 1855.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00167 08 2327284 2335922 Cca08g00167 08 2327284 2335922 ECH