Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02483 ATGAGTTCTCATGGATATGCAGTTGCGAAAACACACAAGCACGATTGGCTCATTCTCTTGCTCCTCGTGTTGATTGTTATCATTCTGTACATTATCCATCCTTTCCATCGTTTTGTTGGGAAGGATATGATGACTGATCTCAGATACCCCCTTAAGAGTAATACAGTTCCTGTTTGGGCTATTCCTATTTATGCAGTTTTGTTGCCTATAGTGATCTTTCTTGTTGTCTATATACGAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTGGGTCTATTCTTCTCCATTTTAGTAACAGCAGTATTTACTGAGGCAATTAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCGGATGGAAAGGATGTTTACGATAAATGGGGAGATGTCATTTGTCATGGTGACGAAAAGGTCGTAAAGGAAGGATACAAGAGTTTCCCAAGCGGCCATACTTCATGGTCATTTTCCTCTCTTGGGTTTTTATCATTGTACCTGTCTGGAAAAATACAAGCATTTGATCGCAGAGGTCATGTTGCAAAACTTTGCATTGTTTTCCTACCACTACTTTTTGCATCACTAGTTGGCATTTCTAGAATTGATGACTACTGGCACCACTGGCAGGACGTGTTTGCTGGAGGTCTTTTAGGGCTTACAGTGGCTACATTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATTCTGAAGGTTGGGGTCCTTATGCATATTTTAGGATGTTGGAAGAATCACGTAGTATGACCCAAGTTCCTAACGTTCAAAATTCTGGTCAAGCGCAGTTATCGGAGGCTCAGGTTGAGAGCCAAGAGGGGCAAGGTTTCCATGGGTGTATGGGGCGGCTATCTTTAGCACGGGATCATAATGCAACATTGAATGACATTGAATCTGGGAGAACATAA 933 0.4202 MSSHGYAVAKTHKHDWLILLLLVLIVIILYIIHPFHRFVGKDMMTDLRYPLKSNTVPVWAIPIYAVLLPIVIFLVVYIRRRDVYDLHHAVLGLFFSILVTAVFTEAIKNAVGRPRPDFFWRCFPDGKDVYDKWGDVICHGDEKVVKEGYKSFPSGHTSWSFSSLGFLSLYLSGKIQAFDRRGHVAKLCIVFLPLLFASLVGISRIDDYWHHWQDVFAGGLLGLTVATFCYLQFFPPPYHSEGWGPYAYFRMLEESRSMTQVPNVQNSGQAQLSEAQVESQEGQGFHGCMGRLSLARDHNATLNDIESGRT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02483 310 CDD PAP2_containing_1_like 45 233 - -
Cca07g02483 310 Pfam PAP2 superfamily 90 234 IPR000326 -
Cca07g02483 310 SMART acid_phosph_2 90 230 IPR000326 -
Cca07g02483 310 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 10 242 - -
Cca07g02483 310 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 11 239 IPR036938 -
Cca07g02483 310 PANTHER LIPID PHOSPHATE PHOSPHATASE 1 2 309 - -
Cca07g02483 310 PANTHER LIPID PHOSPHATE PHOSPHATASE 2 309 IPR043216 GO:0006644
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02483 Cca-Chr7 53602849 53607307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02483 1 309 Lipid Metabolism Gene Families AT3G02600 68.269 5.73e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02483 K18693 - gmx:100800585 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02483 07 53602849 53607307 Cca07g02483 07 53602849 53607307 ECH
Cca06g00301 06 8065138 8072638 Cca07g02483 07 53602849 53607307 ECH
Cca02g02616 02 47328120 47333294 Cca07g02483 07 53602849 53607307 ECH