Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02359 ATGCCTTCTGAAACAATTGACTTCAATTGTTTCTCTTCGTCACTGTATCCCTCTGAAGATATTTGTTCTTCTCATGAGAAGAAGGCTAGCTTATGGAAACCAGATAACCAGCCCAAATGCTATGATTTTGATCAAGGAATAAAAGCCAGCTGGAATGTACAAGCATTATCAAATAAATCGGACAGTAGCAAAGTTAATATAGTTACTACTCAGCATGAAAGTAGCCTCTTCTCAAGTTCTCTGTCAGAGTTGTTTAGCAGGAAATTGAGATTCTCTGGAAATGATGCTTTATATGGACATTCAGTTGACACTGTTGCATCCCATTATGAGGAAGAGAGACTTTTTGACTCTCTTGAAGAACTTGAGGCTCAAATTATTGGAAATCTACTCCCCAGTGACGAGGAATTGCTTTCAGGAGTGACTAATGGGCTTGACCACATCATCCAAGACAGCACTGGTGATGACATGGATGAACTAGACCTTTTCAGCAGTGTTGGAGGGATGGATTTAGGAGATGAGAATAGTTCATCTCCTGGACAAAAGAATTCTGAAATCCTTGATGGAGCTTCTAACAGTCAACTAGGGCTGTGTAGTACCTCAATTGCTGGAGAACAACCTTTCAGTGGACATCCTTCTAGAGCATTAGTTATGAGAAATAATATTAGTGGTGTTGAAGATTCTGAATTGAAAGCTCTTTATGAGATTCGTGAAAATCCACACAGTCAAGATCACGAATTGATTAAATATTCTAATGTAAGAGGTGCAGAGGCATCTCTCCATGCTTTAAATAGAGATGATACTACCAGGAAGAGGCTAAGGGTTGAGCCAAATCAATCTGAAGATTCAACACAGTGTATGGCTCAACAGATCCATCCAGAATTGGAACAGAAAGAAAGTAGCCTTTATCTGCATCAGAACAGTGCAACTAGCTTCCCAGGTTTGCATGGGATTTCTAAATTTGGTATTATAGATGGTGGAAGAATTCCTGGTGCTGAGCCTGCTACATGCTCACCAACCCTGGAAACTGCTTTTGCTCATGGTGTCTCTTCAAGTCTTCCTAATTCCTTACCATCTCTAATCAGAGTGAAATCAGTTAGCAGCGCATGTGAAATTACTGAATCTGGTTCACCAGACCAGTTGAATATTCAAGATGCATCAGCTTTTCATCCACATTCCCTTCCAGAATGTCACAACGGTTTAGCTAACAGTCGTATTCCTCCTGAGGTGGCAGCAAACATCAATCTCAAAAAACAGGAAAGAGTGGATGACATGCAGTTCTGTCAAGTGAATTCCAATGGACGCTTCATGGAATTCAATGAATGTGTTTTTAATTCCTCTAGTAATGGAAGCTGCCCTCTTCCTGGACAACATTGCAAATGGGGCAACAACTCCTATCATCCTCCTGGAATGGTGTGGCCAAATTCACCTTCATATTATGATGGAGTTTGTGCAGCCCCTACCCTCCCAAGATTGCATGGACTTCCTAGGTCACCATCACATATGATGACCACTGTTTTACCCATAAATGGCCAGCATGTGCCTTCAGTTCCTTTTTGGGACAGAAGACATACCTATGCAGGGGAATCTCTTGGGAATATGCAATTTTCTGGTAATACAGCACCACCTTGCGTTGACTTTGTTTCCTATAACATCTTTCCCCATTTTGGGGGAAACTGTGTTGACCTTAGAATCCTCCCCAAGAATCTTGGACTCCATTTTCATAACCAAAGGGACCTACTGTTTCCTAGAAGAAACCATATGATTAATTCATTTGAGACTCACAAACAACGTGCTAGAAGCCGCAGAAATGAAGGCGTGACAAACTTGGCTGACAAGAAACAGTATGAACTTGATATTGACCGCATCAAGAATGGTGAAGATAACCGAACAACACTTATGCTTAAGAACATTCCTAACAAGTATACATCCAAGATGCTGTTGGCTGCAATTGATGAACGCCATAGAGGAACTTATGATTTTGTTTATCTACCAATTGATTTCAGAAATAAATGCAATGTGGGATATGCATTCATCAACATGACTAGTCCTGGCTTGATTATACCATTCTATCAGGTGTTCAATGGAAAGAAATGGGAGAAATTCAACAGTGAGAAAGTGGCATCACTAGCATATGCTCGCATACAAGGGAAAGCAGCTCTCATTGCTCACTTTCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAACACCGACGGCCCTAATGCCGGTGACCAGGTTCCTTTTCCAGTAGGCATTAACATTCGCAACAAAGCTGGAAGAGTGAGAAACAACACTCATGAGAATAACATGCAAGGGAGTCCTCCTAATTTGGGAAACAATAAGCTCTCTTCTGATGGAGCCAGTCATTCATTGGAGTCAGACTAA 2403 0.4124 MPSETIDFNCFSSSLYPSEDICSSHEKKASLWKPDNQPKCYDFDQGIKASWNVQALSNKSDSSKVNIVTTQHESSLFSSSLSELFSRKLRFSGNDALYGHSVDTVASHYEEERLFDSLEELEAQIIGNLLPSDEELLSGVTNGLDHIIQDSTGDDMDELDLFSSVGGMDLGDENSSSPGQKNSEILDGASNSQLGLCSTSIAGEQPFSGHPSRALVMRNNISGVEDSELKALYEIRENPHSQDHELIKYSNVRGAEASLHALNRDDTTRKRLRVEPNQSEDSTQCMAQQIHPELEQKESSLYLHQNSATSFPGLHGISKFGIIDGGRIPGAEPATCSPTLETAFAHGVSSSLPNSLPSLIRVKSVSSACEITESGSPDQLNIQDASAFHPHSLPECHNGLANSRIPPEVAANINLKKQERVDDMQFCQVNSNGRFMEFNECVFNSSSNGSCPLPGQHCKWGNNSYHPPGMVWPNSPSYYDGVCAAPTLPRLHGLPRSPSHMMTTVLPINGQHVPSVPFWDRRHTYAGESLGNMQFSGNTAPPCVDFVSYNIFPHFGGNCVDLRILPKNLGLHFHNQRDLLFPRRNHMINSFETHKQRARSRRNEGVTNLADKKQYELDIDRIKNGEDNRTTLMLKNIPNKYTSKMLLAAIDERHRGTYDFVYLPIDFRNKCNVGYAFINMTSPGLIIPFYQVFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPVGINIRNKAGRVRNNTHENNMQGSPPNLGNNKLSSDGASHSLESD 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02359 800 MobiDBLite consensus disorder prediction 167 187 - -
Cca07g02359 800 PANTHER RNA RECOGNITION MOTIF-CONTAINING 30 234 - -
Cca07g02359 800 PANTHER RNA RECOGNITION MOTIF-CONTAINING 234 792 - -
Cca07g02359 800 MobiDBLite consensus disorder prediction 169 187 - -
Cca07g02359 800 CDD RRM3_MEI2_like 632 717 IPR034454 -
Cca07g02359 800 MobiDBLite consensus disorder prediction 770 800 - -
Cca07g02359 800 PANTHER PROTEIN MEI2-LIKE 4 234 792 - -
Cca07g02359 800 PANTHER PROTEIN MEI2-LIKE 4 30 234 - -
Cca07g02359 800 SUPERFAMILY RNA-binding domain, RBD 631 716 IPR035979 GO:0003676
Cca07g02359 800 Pfam RNA recognition motif 2 629 725 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02359 Cca-Chr7 52199492 52205820 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02359 - - var:108327001 1175.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02359 07 52199492 52205820 Cca07g02359 07 52199492 52205820 ECH