Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01957 ATGTCGCAGTTGTTGGACAAAGCCAAAAACTATGTTTCGGAGAAAGTCACGAACATGCCGAAGCCGGAGGCGACTGTGAACGACGTGGATTTCACGCGCGTGGGGCGCGACGGCGTCCAGTACTTGGCCAAGGTCTCTGTTTCCAACCCTTACTCCACTCCCCTCCCCATTTGCGAGATCAAATACTCCCTCAAGAGTGCTGGCAGGGAGATTGCATCGGGGACAATACCTGACCCAGGGTCGTTGAAGGCAAAGGACACAACCATGTTGGATGTTCCAGTGAAGGTCCCTCACAGCGTGTTGCTGAGTCTGGCAAAGGACATTGGTGCAGATTGGGACATCGATTATCAATTGGATCTTGGTCTCGTCATCGACCTTCCTGTCATTGGCAACTTCACCATTCCCCTTTCTCAAAAGGGTGAGATCAAGCTCCCCACCCTCCGAGACATGTTTGCCTAA 459 0.5251 MSQLLDKAKNYVSEKVTNMPKPEATVNDVDFTRVGRDGVQYLAKVSVSNPYSTPLPICEIKYSLKSAGREIASGTIPDPGSLKAKDTTMLDVPVKVPHSVLLSLAKDIGADWDIDYQLDLGLVIDLPVIGNFTIPLSQKGEIKLPTLRDMFA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01957 152 PANTHER - 1 152 IPR045043 -
Cca07g01957 152 Pfam Late embryogenesis abundant protein 44 140 IPR004864 -
Cca07g01957 152 SUPERFAMILY LEA14-like 1 150 - -
Cca07g01957 152 Gene3D - 17 151 - -
Cca07g01957 152 PANTHER DESICCATION PROTECTANT PROTEIN LEA14 1 152 - -
Cca07g01957 152 SMART why 24 141 IPR013990 GO:0009269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01957 Cca-Chr7 47030256 47030821 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01957 - - gmx:547837 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01957 07 47030256 47030821 Cca07g01957 07 47030256 47030821 ECH
Cca07g01957 07 47030256 47030821 Cca01g02340 01 52017524 52018500 PCT