Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00878 ATGTTGAGGGCCAAGTTGGTTCGTTCGGGAAATGATACTCTGCGAATCGCAGCTTTCTTCTTCAAGAACCTCAAGAGAGCTCAAATCCTTCACACTGACATTTCCTCTACAGTTGACAAGATTTTGCAAGATGAAGTGAATGTTGTATCATATGGAGTACTGGGCTATCTTCTTCTTGGTGTTGTCAGAATATACTCAAAAAAGGTTGAATATGTTCTCCATGATTGCGAGGTGCTCATTAAAATCAATAAATTTGTGATCAACACAGAAGACATTACACATGTGGAAACCTTGCGTATGTCTATTACTATACCAGACAAATTAGAGTTGGATGCTTTTGAGTTGGATATACCTGAAGATGCTGTCGGAGACCATATTGCTGCTCCGGAAGAAATTACTCTTAAAGGTATTGGAATTATTTCACTATTTTTTTATTTCATATTTGAGGAGTTTGATTTTGGAGAAAGTACCTGCACTTTTGATCACCATATAGTGGAAAATGTTCGTCTATCTCAAATGTTGATGGAAATTGAAGTTTTTCCACAGAAGAGTCCGATTGGTTTACTGGAAAGCAGGGATACATGTCAAAGTAGCATATTTTCTCCAAATGAAGTAACAAACTTTGACAATAGTTCACTAATAGCAGGAGTAGAAAAAGAATCAGCCAATTTGTTGGGTCAAAATCAACAAATTATTGAAGATCGGTCAATTAAACACATTGTACCATGTGAAGATGAAATACAGGAAGAAAGTAGTAGAATCTCTCAAGAGGGACCTATGGATAACAATATGTTTTCCATGAGAGAGAAGGAACACGTGTTATTTGTTGAAGCATTTAATGAGTCTCATCAAGTTGACATTGATCAGAATTCCAACAAGGAAACATCAAGCTCATTATGCAAAATGAATCAGGAAATTATTGGAGTTCATGAAGCAAGATGTTTACAAGAAAGTATTGAAAAGCCTCAAAATGAAAAATCCTATGAAAAAGAATGTGTGCGCCATGGCAATTCATTTGTTGACAAGGAGATCCCTGAAGAACACATTGAAGGGTCTGTTGAAAAACATGATAACAAAGGCAAATTAGTGTTTCAAGAACAGGTTTCACTAGAAGATGAAAGGCTTAGTGTTATTTCACCAAAGTCAATAAATCTTGATGCAACTCCTCAATCCAAGTTTAATGTTGATTCAGTTGGAAGACCAAAACGAGGTGCTACTTTATCAGACTCAATGCTTATTTCTACACCAGCTGTGAGAGAGCGTCCTCACTTTTCAAGGAAAAGAAAAGTTGTGTTATATAATAAAAGGGTTGTCCTATCTAATGAGGTACTTAAAGAGAATATACGTGATGCAAGTAGCTTAGTTTCTGACCGAAGAAAATCCCATCGTACTGTACATACTGTGCTGAGAGAATCTCTCATTGCCAGTCTTCCTAATAGATTCTATGAGCCATTGCATCCTTGTTCCTCAAATCTTCAACTCCTATTCTCTAAAAAGGAAATGAAAATACCAGATTCCCTTCGGATTATGGAAACTTTAGGGAACTTAGATGTGTCAGAATCTCAAACTGTTGGCAGTCCACAGCCAATAGCAAATATTCTACCAACCCCTTGCCACCACTGCCCAGATATATCTGAATCTCAGGCTTCTGGCAGTCCAGAGCATATAGCAGCTTCTAGTCCTCATGAAAACATAGAGACGGAGCAATCTTTGGAAAGGAATGAATGGCTTGTCTTCTTGATAATGTACAGGAAAGTTGCAAGTTACTTGCATCAAAGTTTTCTACATTCAAAGAAACACAGAGAGGAGGATGTTGTAAACTTTTCACAAGTTTTTGGAGGCCAAATGCGGAAAGAATCTGCAAAGCTATTTTATGAAATACTGGTTTTGAAAAGTACAGGCTATGTAGATGTGGAGCAAAAGGAAGCTTATGGTGATATTGCAATCTTTAAGCTCCCAAAATTAGACCAAACTTTTTGA 1980 0.3702 MLRAKLVRSGNDTLRIAAFFFKNLKRAQILHTDISSTVDKILQDEVNVVSYGVLGYLLLGVVRIYSKKVEYVLHDCEVLIKINKFVINTEDITHVETLRMSITIPDKLELDAFELDIPEDAVGDHIAAPEEITLKGIGIISLFFYFIFEEFDFGESTCTFDHHIVENVRLSQMLMEIEVFPQKSPIGLLESRDTCQSSIFSPNEVTNFDNSSLIAGVEKESANLLGQNQQIIEDRSIKHIVPCEDEIQEESSRISQEGPMDNNMFSMREKEHVLFVEAFNESHQVDIDQNSNKETSSSLCKMNQEIIGVHEARCLQESIEKPQNEKSYEKECVRHGNSFVDKEIPEEHIEGSVEKHDNKGKLVFQEQVSLEDERLSVISPKSINLDATPQSKFNVDSVGRPKRGATLSDSMLISTPAVRERPHFSRKRKVVLYNKRVVLSNEVLKENIRDASSLVSDRRKSHRTVHTVLRESLIASLPNRFYEPLHPCSSNLQLLFSKKEMKIPDSLRIMETLGNLDVSESQTVGSPQPIANILPTPCHHCPDISESQASGSPEHIAASSPHENIETEQSLERNEWLVFLIMYRKVASYLHQSFLHSKKHREEDVVNFSQVFGGQMRKESAKLFYEILVLKSTGYVDVEQKEAYGDIAIFKLPKLDQTF 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00878 659 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 13 659 - -
Cca07g00878 659 SUPERFAMILY "Winged helix" DNA-binding domain 583 655 IPR036390 -
Cca07g00878 659 MobiDBLite consensus disorder prediction 543 566 - -
Cca07g00878 659 Pfam N terminus of Rad21 / Rec8 like protein 16 89 IPR006910 GO:0005515
Cca07g00878 659 MobiDBLite consensus disorder prediction 543 565 - -
Cca07g00878 659 Gene3D Structural maintenance of chromosome 1. Chain E 583 659 IPR023093 -
Cca07g00878 659 Pfam Conserved region of Rad21 / Rec8 like protein 602 651 IPR006909 -
Cca07g00878 659 PANTHER SCC1 / RAD21 FAMILY MEMBER 13 659 IPR039781 GO:0007062|GO:0008278
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00878 Cca-Chr7 15084193 15099155 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00878 K06670 - ccaj:109818301 376.326