Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00873 ATGACGTCCTCTGCAACAGACGATAACCCAAGATCCGTGAAAAGAGTAGCTGTTGTTGGTGCCGGGGTAAGTGGGCTTGCTGCAGCTTACAAATTGAAATCACATGGTCTGGATGTCACTGTATTTGAAGCTGAAGGAAGAGCTGGAGGGAGGTTGAGAAGTGTTTCTCGGGATGGTCTAATTTGGGATGAGGGAGCTAATACAATGACTGAAAGTGAAATTGAGGTTAAAGGTTTGATTGATGCTCTTGGACTTCAAGAAAAGCAACAATTTCCAATATCACAGCATAAGCGCTATATTGTGAAAAATGGGGAACCACTTCTGGTACCCACAAATCCTGCTGCATTACTGAAGAGCAAACTGCTTTCTGCACAATCCAAGATCCAGGTCATTTTTGAACCATTTATGTGGAAAAGAAGGGACCCCTCTAGTCTGTGTGATGAAAATTCTGAGGAAAGTGTTGGCAGTTTCTTTGAACGTCATTTTGGGAAAGAGGTTGTGGACTATCTGATTGATCCTTTTGTTGGAGGCAGTAGTGCAGCAGCTCCTGAATCTCTTTCTATGCGTCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGGTTTGGCTCCATTATAGCCGGGGCTTTGAAATCCAAGTTATTTGCCGGAAGGGACAAAACTGGAGAAAATAAGATGGCACAAAGAAAAAACAAACCTAAGCGTGGTTCATTTTCTTTTCAGGGTGGGATGCAGACACTGACAGACACATTGTGCAAAGAGCTTGGCAAAGATGACCTTAAATTAAATGCAAAGGTTTTGACATTAGCTTATGGTCCTGATGGAAGTTCCTCATTGCAAAACTGGTCTATTACTTGTGCTTCTGATCAAAGAACACAAGATGTTGATGCAGTAATAATGACGGCTCCTCTATCTAGTGTCAAGGACCTCAAGATCACAAAAAGGGGAACCCCCTTTCCACTTAATTTTCTTCCCGAGATTACCTATGTGCCAATCTCAGTCATGATTACTACCTTCAAAAAGGAGAATATAAAGAGACCTTTGGAAGGATTTGGAGTTCTTGTTCCTTCTAAAGAGCAACAAAATGGTTTAAAAACCCTTGGGACACTTTTTTCCTCTATGATGTTTCCAGATCGTGCACCTAGTGATTTATATCTCTATACCACCTTCATTGGTGGAGCTCAGAACAGGGAACTGGCTCAAGCTTCAACTGATGAGCTTAAGAAAATTGTGACTTCTGACTTGAGAAAGTTGTTGGGAGCAGAGGGGGAACCAACATTTGTTAATTCTAGATTATGCTCAATTGCAGCCATTTCTGTTGGAGTAAAGGCTTTCCTTTGTATGGACGTAACTATGGGTCAGTTCTTGAAGCTATTGATAGGATAG 1386 0.4163 MTSSATDDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEAEGRAGGRLRSVSRDGLIWDEGANTMTESEIEVKGLIDALGLQEKQQFPISQHKRYIVKNGEPLLVPTNPAALLKSKLLSAQSKIQVIFEPFMWKRRDPSSLCDENSEESVGSFFERHFGKEVVDYLIDPFVGGSSAAAPESLSMRHSFPELWNLEKRFGSIIAGALKSKLFAGRDKTGENKMAQRKNKPKRGSFSFQGGMQTLTDTLCKELGKDDLKLNAKVLTLAYGPDGSSSLQNWSITCASDQRTQDVDAVIMTAPLSSVKDLKITKRGTPFPLNFLPEITYVPISVMITTFKKENIKRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRAPSDLYLYTTFIGGAQNRELAQASTDELKKIVTSDLRKLLGAEGEPTFVNSRLCSIAAISVGVKAFLCMDVTMGQFLKLLIG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00873 461 TIGRFAM proto_IX_ox: protoporphyrinogen oxidase 14 430 IPR004572 GO:0004729|GO:0006779
Cca07g00873 461 Gene3D - 15 441 IPR036188 -
Cca07g00873 461 Pfam Flavin containing amine oxidoreductase 23 428 IPR002937 GO:0016491
Cca07g00873 461 PANTHER PROTOPORPHYRINOGEN OXIDASE 12 436 - -
Cca07g00873 461 PRINTS Adrenodoxin reductase family signature 15 37 - -
Cca07g00873 461 PRINTS Adrenodoxin reductase family signature 38 51 - -
Cca07g00873 461 SUPERFAMILY FAD-linked reductases, C-terminal domain 329 430 - -
Cca07g00873 461 SUPERFAMILY FAD/NAD(P)-binding domain 14 341 IPR036188 -
Cca07g00873 461 Gene3D protoporphyrinogen ix oxidase, domain 3 109 220 - -
Cca07g00873 461 MobiDBLite consensus disorder prediction 221 240 - -
Cca07g00873 461 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 51 440 - -
Cca07g00873 461 PANTHER PROTOPORPHYRINOGEN OXIDASE 12 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00873 Cca-Chr7 14912652 14924122 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00873 K00231 - gmx:547941 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00873 07 14912652 14924122 Cca07g00873 07 14912652 14924122 ECH