Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00868 ATGGAGAAGCTAATAAGGCGGTATGAACGTGTGTTCAAGCACTTTGATGAGAACGGAGACGGCAAGATATCGGCGGCGGAGCTGCGGCAGTGCGTGGAGGCGATGGGGGAGGAGTTGTcggcggcggatgcggcgacggcggtggcaatgctggatggcgacggggacggGTTGGTGGGGTTGGATGATTTTGTGAGGTTTGTGGAGGGAGGGGAAGAGGAAGAGAAGGAGAATGACCTAAAGGAGGCTTTTAAGATGTATGAGATGGATGGAAGTGGTTGCATCACACCAAGGAGTCTTAAGAGGATGCTTAGTAGGTTAGGTGAGTCTAGGAGTATTCATGAGTGTGAGGTTATGATAGCTAGGTTTGATCTTGATGGAGATGGTGTGCTCACGTTCGATGAATTTAAGATCCAAGGTGGAAACAACAAATTTAAGAAAAAAAAACCTTTACTTCTCACCTGCGCACACGACTCCGCGACTAGACGCCCTCCTTTGCGCTGCAATCAGACCCCTTACTCCGCGCCGCGGCCGGAAACCCCACGCGTGTTGCCTCTACGACCGAAACCCCCTCCCCGCGCGCAAGCCTTCGCGGCCAGACCCCCAACAAGCCTGTCTCCACGATTGGACCCTCCTGCCTGTGCGAGCGCCTCTGCGGCCGGACCACCCTCGTGCGCAAGCCTTTGCGGCCGGAATACCCTGtgtcgttacaCCCCGCGCAAGCACGCCTTTGTGGCTAGAACTCCCTCCCCGTGCGCACGCCTCTGCGACCAGACCACCTCCGCGTGTGCGGTCCGCGGCCCGAATCCCACCCCCGCGTGCGCACCTCCTTGGTCAGACCCCTCTCCGCGTGTGCACCTCCACGGCTGGACCACCCCCTCTGCGACCAGACCCCTCGCGCGAGCGCTCCGCGGCTGGAACCCCCTCCCCGCGCGTGCCTCATTGGCTGGACCCCTCCTTGCGCGCACACTTCCGCAGCTGGATCACCTCCTGCGCGCCCAAACCTCCATTCGGGGTGGCCATGGTgagagagaggggaagagaaagtga 1050 0.5476 MEKLIRRYERVFKHFDENGDGKISAAELRQCVEAMGEELSAADAATAVAMLDGDGDGLVGLDDFVRFVEGGEEEEKENDLKEAFKMYEMDGSGCITPRSLKRMLSRLGESRSIHECEVMIARFDLDGDGVLTFDEFKIQGGNNKFKKKKPLLLTCAHDSATRRPPLRCNQTPYSAPRPETPRVLPLRPKPPPRAQAFAARPPTSLSPRLDPPACASASAAGPPSCASLCGRNTLCRYTPRKHAFVARTPSPCARLCDQTTSACAVRGPNPTPACAPPWSDPSPRVHLHGWTTPSATRPLARALRGWNPLPARASLAGPLLARTLPQLDHLLRAQTSIRGGHGEREGKRK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00868 349 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Cca07g00868 349 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Cca07g00868 349 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 7 138 - -
Cca07g00868 349 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Cca07g00868 349 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 138 - -
Cca07g00868 349 CDD EFh 79 136 IPR002048 GO:0005509
Cca07g00868 349 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Cca07g00868 349 Pfam EF-hand domain pair 9 68 IPR002048 GO:0005509
Cca07g00868 349 Pfam EF-hand domain pair 78 137 IPR002048 GO:0005509
Cca07g00868 349 Gene3D - 1 69 - -
Cca07g00868 349 SUPERFAMILY EF-hand 4 137 IPR011992 -
Cca07g00868 349 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Cca07g00868 349 CDD EFh 7 68 IPR002048 GO:0005509
Cca07g00868 349 MobiDBLite consensus disorder prediction 178 197 - -
Cca07g00868 349 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Cca07g00868 349 Gene3D - 70 150 - -
Cca07g00868 349 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Cca07g00868 349 SMART efh_1 43 71 IPR002048 GO:0005509
Cca07g00868 349 SMART efh_1 115 143 IPR002048 GO:0005509
Cca07g00868 349 SMART efh_1 7 35 IPR002048 GO:0005509
Cca07g00868 349 SMART efh_1 79 107 IPR002048 GO:0005509
Cca07g00868 349 MobiDBLite consensus disorder prediction 163 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00868 Cca-Chr7 14788568 14796534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00868 6 138 EF-hand Containing Proteins AT1G76650 48.872 2.09e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00868 K13448 - gmx:100784553 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00868 07 14788568 14796534 Cca07g00868 07 14788568 14796534 ECH