Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00792 ATGCCTGAAGAAGAAGTGGTGGAGCTCAAATTCCGTCTCTACGATGGATCCGATATTGGACCCTTCCGTTACTCGCCGGCTTCCACTGTGGCTATGCTCAAGGACCGGATTTTCGCCGACTGGCCCAAAGACAAGAAAATTATACCAAAGGCAGCAAATGATATAAAACTGATAAGTGCTGGCAAAATTTTGGAGAACAACAAGACAGTTGGCCAGTGTAGAGTACCATTTGGCGAGCTTCCTAAAGGGGTTATCACCATGCATGTTGTGGTCCAGCCATCTTTGCTCAAAGCAAAAACAGAGAAAAAAGTTGATGAGATGCCCAGAAAACACATATGTGCATGTTCGATATTGTGA 357 0.4482 MPEEEVVELKFRLYDGSDIGPFRYSPASTVAMLKDRIFADWPKDKKIIPKAANDIKLISAGKILENNKTVGQCRVPFGELPKGVITMHVVVQPSLLKAKTEKKVDEMPRKHICACSIL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00792 118 PIRSF MUB 1 118 IPR017000 -
Cca07g00792 118 SUPERFAMILY Ubiquitin-like 2 95 IPR029071 -
Cca07g00792 118 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 116 IPR039540 -
Cca07g00792 118 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 118 IPR040015 -
Cca07g00792 118 CDD Ubl_MUBs_plant 7 93 - -
Cca07g00792 118 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Cca07g00792 118 Gene3D - 1 100 - -
Cca07g00792 118 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00792 Cca-Chr7 12762510 12766455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00792 - - gmx:100500075 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00792 07 12762510 12766455 Cca07g00792 07 12762510 12766455 ECH