Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00790 ATGGGTAGCACATTTAATCCACAGATTTTAGTGGAAAAACTAGCCAAGCTGAATGTTTCACAAACGAGCATAGAGACTTTGTCACATTGGTGCATTTTTCATATGAACAAAGCCAAACAAGTTGTTGAAACGTGGGATAGACAATTTCACAGTTCTCCTCGTGAGAAGAAGTTGGCATTTCTGTATCTTGCAAACGATATTTTACAGAACAGCAGGCGAAAGGGTTCTGAATTTGTTGGTGAATTTTGGAAGGTTCTTCCAGATGCTCTTCGAGATGTGATTCAAAATGGAGATGATTTTGCGAAGAATGCAGCACATCGTCTGATTGGTATATGGGAAGACAGAAAGGTTTTTGGTTCTCGCGGTCAAATTCTAAAGGAAGAGTTTGTTGGGAGGCATGCAGATAATAGTAGCCGAGATGTGAAACCTACAAACGTGAAATTGAGGCCATCTGCGGGGAATGCATTGGAGAAAATAGTTTCAGGTTTTCATGTTGTTTATGGAGTGCAAGCAGATGAAGATGCGATATTGAGCAAATGTAGGAATGCCATTAACTGTCTTGATAAAGCAGATAAGGATATAGGTCATGATGGTAATTCAGGTCAATTCAGTGGATCTGCCGTAGTGGATGAGCTCCGGGGGCATAATGCTGTATTGAAGGACTGCATCGAGCAATTAACAGCCATAGAGGCATCCAGAGCTAGTCTTGTGTCTCACTTGAGAGAAGCTCTTGAGGATCAGGAATTCAAGCTGGGTCAAGTCCGTAACCAGATTCAGGCTGCACATGTTCAGTCAGAACGGGCGAGTAACACCTGTCGCCAATTACTTAATGGCAACAACATTCAGTCATTAGCTGAGTCGAGTTCAAAGGAGATTCAAACTTCCATGACACCTTCAGGTTTTAATATTTCCGGTGAAAGGGAGCAATCGGCTCCTTTAATGTACACACCACAAGTGTCATTTTCTCAAAAATCTGGGCACATTGAAGAAGATCCACGGAAGTCTGCTGCTGCTGCGGTGGCAGCAAAATTGACTGCTTCAACATCCTCAGCGCAGATGCTGTCTTATGTGCTGTCCTCCTTAGCATCAGAAGGTGTATTAGGCAACCCAATGAAAGAGTCTTCGGCTGATTATCACACTGAGAAGAGGACCAAGCTCGAGAATGACCAATCATCTTTTATACCATCTCAGAATCCTCAACAACCACTTCCTCCCTTTTCACTTTCTGAGCCTATTCAACATAATGCACCTACAACCAACCAGCAATTGACTCCCAACGAacctccacctccaccctcatcatcacctcccccattgccgccaccaccaccaATGTCACAGTATCCCGTGCCGCAGTTCATGCAAACTGCTGGATCCATTAGTAGCATGGCATACAGCTATGGCATGACACAACAGCCATCGATAGCGGCCTATCCAGGTGTTGGAGCTTCCCTGAATGGTGTCTCCACTTTTACTCCTCCACCGATGGGTACATATCAGGGTTTTCAGGGTTCAGATGGAAATTACTATAACCAGCCCTCATCAATGCCCATGGCACCAATATCTCGACAATAA 1575 0.4241 MGSTFNPQILVEKLAKLNVSQTSIETLSHWCIFHMNKAKQVVETWDRQFHSSPREKKLAFLYLANDILQNSRRKGSEFVGEFWKVLPDALRDVIQNGDDFAKNAAHRLIGIWEDRKVFGSRGQILKEEFVGRHADNSSRDVKPTNVKLRPSAGNALEKIVSGFHVVYGVQADEDAILSKCRNAINCLDKADKDIGHDGNSGQFSGSAVVDELRGHNAVLKDCIEQLTAIEASRASLVSHLREALEDQEFKLGQVRNQIQAAHVQSERASNTCRQLLNGNNIQSLAESSSKEIQTSMTPSGFNISGEREQSAPLMYTPQVSFSQKSGHIEEDPRKSAAAAVAAKLTASTSSAQMLSYVLSSLASEGVLGNPMKESSADYHTEKRTKLENDQSSFIPSQNPQQPLPPFSLSEPIQHNAPTTNQQLTPNEPPPPPSSSPPPLPPPPPMSQYPVPQFMQTAGSISSMAYSYGMTQQPSIAAYPGVGASLNGVSTFTPPPMGTYQGFQGSDGNYYNQPSSMPMAPISRQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00790 524 Pfam CID domain 9 120 IPR006569 -
Cca07g00790 524 MobiDBLite consensus disorder prediction 407 422 - -
Cca07g00790 524 CDD CID_RPRD_like 7 128 - -
Cca07g00790 524 MobiDBLite consensus disorder prediction 367 454 - -
Cca07g00790 524 SMART 558neu5 9 130 IPR006569 -
Cca07g00790 524 PANTHER OS01G0925000 PROTEIN 1 524 - -
Cca07g00790 524 MobiDBLite consensus disorder prediction 485 524 - -
Cca07g00790 524 SUPERFAMILY ENTH/VHS domain 13 117 IPR008942 -
Cca07g00790 524 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Cca07g00790 524 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 524 - -
Cca07g00790 524 Gene3D - 2 129 IPR008942 -
Cca07g00790 524 MobiDBLite consensus disorder prediction 423 449 - -
Cca07g00790 524 MobiDBLite consensus disorder prediction 477 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00790 Cca-Chr7 12674305 12688653 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00790 K15559 - gmx:100806108 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00790 07 12674305 12688653 Cca07g00790 07 12674305 12688653 ECH