Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00772 ATGGGGTGCACTTACTCTGTGTATAGGAAGAAAAAGGCAAGCTTCCCTGAAGTGGTGGTTTTTGTTCCATCAACAAGAATTCCAGTGCAATCTGATCTTCAAAGGGTGCTTAAAGGAGTAATTCCAAGGGATCTTGCTGATAAATTCACTTCTCTAAGGAATCAGATAGTGTTGGTAGCAGAGGATACTGGTGGGTCAGCTATAGCTGAATTGCGGCGAGCTTTGAATGAATATTTGTCCGTTCTGATTGGACTTACTAAGAAAGAGTATGGTCTTGAAGGACTAATAGAATTCAAGTGGAAAAATTTAGAAGATGGGAGACAAGAGAGTAGTGTAGCAAATACATGGTTTGAGGTGCTATCTGCAATTCACCTTATGGCTATGCTGTCACTGTCTGAGGCTGACTCATTGATGATTCCAAAGGACCCTTCAGGCTCTGGATTCAGGGTTGTATCTTCAGATAGCAAGAGGGAAGCCATTGATTTGTTACTCAAGGCCTCAGGGTACCTGGAGTTTTGTGTAAGGGATATTCTTACTCGGATACCTGCTGAAACCAAGAAAACTTTTCCCCACGACTTGCAGGAGGGTGTATTGGAGGCTATTACTATTCAAACACTAGGCCAGGGAACTGAGATTCAGCTTGGTCTTGCGGTGGAAAGTCAGAAGGCAACTTTGTCTGTTAAGAGGAGGTTGGCATGTGAACAGCTGATTTACTTTAGTCAGGCTTATCACTGCTTGTCAGGATGTGACTTCAATCAAGTCCAAGGGCATGGAAGGAAGCATCTCAGATTCATCAAATGGAAATTCCTTGAAGCCAAGGCTGCAGCATACTACTACCATGGTCTGATCCTTGACAAAGGTAATGAACCAAGCAGTCACATTGGTGCTGTCTCTTGTTTTCTTGCTGCAGAAGAACTTCTGGCTGAAAGCAAGAAGGCCTGCTTAAGCTTTTGTCTTGCATCTCCAGTGACAAGGGCTCCTCCACTTTGGGGTGCTATGAAATTTCTACATCAGAAAATTCCTGAAGTTGCATCAAGGAAGTCCCAGATGTATGGCTACCTCTGGGAGCAAGAGAAGGGTCTCCAATCATTGCCGGAGCTTCCTGAGTTTCAATTATCATTACGTCCAGATGACTATGAACTGCCTGAAATTGATCCAGCATGGGATAGTAAAAACTGGGAATCTCTGGGACAACCATTGAAAGAGCACCTTAGAGATAGTGATGAGAATCCAACTGATCATGATTGA 1248 0.4367 MGCTYSVYRKKKASFPEVVVFVPSTRIPVQSDLQRVLKGVIPRDLADKFTSLRNQIVLVAEDTGGSAIAELRRALNEYLSVLIGLTKKEYGLEGLIEFKWKNLEDGRQESSVANTWFEVLSAIHLMAMLSLSEADSLMIPKDPSGSGFRVVSSDSKREAIDLLLKASGYLEFCVRDILTRIPAETKKTFPHDLQEGVLEAITIQTLGQGTEIQLGLAVESQKATLSVKRRLACEQLIYFSQAYHCLSGCDFNQVQGHGRKHLRFIKWKFLEAKAAAYYYHGLILDKGNEPSSHIGAVSCFLAAEELLAESKKACLSFCLASPVTRAPPLWGAMKFLHQKIPEVASRKSQMYGYLWEQEKGLQSLPELPEFQLSLRPDDYELPEIDPAWDSKNWESLGQPLKEHLRDSDENPTDHD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00772 415 ProSiteProfiles BRO1 domain profile. 1 415 IPR004328 -
Cca07g00772 415 PANTHER UNCHARACTERIZED 1 410 IPR038898 -
Cca07g00772 415 Gene3D alix/aip1 like domains 32 397 IPR038499 -
Cca07g00772 415 PANTHER ENDOSOMAL TARGETING BRO1-LIKE DOMAIN-CONTAINING PROTEIN 1 410 - -
Cca07g00772 415 SMART BRO1_2 19 384 IPR004328 -
Cca07g00772 415 Pfam BRO1-like domain 47 311 IPR004328 -
Cca07g00772 415 CDD BRO1_Alix_like 11 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00772 Cca-Chr7 12069229 12074288 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00772 - - gmx:100786306 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00772 07 12069229 12074288 Cca07g00772 07 12069229 12074288 ECH