Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00767 ATGATGAATTATTTCCCGGACGAGGTAATAGAGCACATCTTTGACTATGTGGTGTCACACCGTGACCGGAACGCTTTGTCTTTGGTGTGCAAGAGCTGGTACAGGATAGAGAGGTTTACGAGGCAGAGAGTGTTCATAGGGAACTGTTACTCCATCACTCCGGAGAGGTTGATCCAGAGGTTTCCTGGTCTCAAGTCTTTAACTTTGAAGGGAAAGCCTCATTTTGCTGACTTTAGTTTGGTTCCTTATGATTGGGGTGGTTTTCTGTGTCCGTGGATTGAGGCACTGGCCAAGAGCAGGGTTGGTTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCACACACTTTAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCACCACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAAGATCACAAAGGGCAGTGGCTAAGTTGTTTTCCTGATAGCTGTACTTCACTTGTCTCTCTGAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCTCTAGAGAGACTAGTGGCCAGATCTCCTAACCTGAAGAGCTTAAAGCTGAATCGTTCAGTGCCCCTCGACGCACTGCAAAGGATAATGATGCGAGCACCTCAACTAGCGGATTTGGGAATCGGATCATTTGTTCATGATCCAGATTCAGAGGCCTACATAAGGCTCAAGAATACCATTCTCAAGTGCAAGTCCATAACCAGTTTGTCAGGGTTTTTGGAAGTTGCTCCTCACTGTCTTGCAGCTATCTATCCTATTTGCCCCAACCTAACGTCCTTGAACTTGAGCTATGCAGCAGGCATTCAGGGCAGCGAGCTGATAAAACTAATTCGCCACTGTGGGAAACTTCAGCGTTTATGGATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTATGACATGTAAAGACTTGCAAGAATTGAGAGTTTTTCCATCTGCACCCTATGGGAATCCAGCAGCTGTGACAGAAAAAGGGTTGGTTGCAATATCAATGGGTTGCCCCAAGCTTCATTCATTGCTCTACTTCTGCCACCAGATGACAAATGCTGCCCTCATAACCGTGGCAAAGAACTGTCCAAATTTTATCCGCTTTAGGCTGTGTATCCTTGAAGCATTGAAACCTGACCCTGATACATTGGAGCCGCTGGATGAAGGTTTCGGCGCAATCGTGCAGTCTTGCAGGCGGCTCAGGCGCCTATCGCTCTCCGGCCAATTGACTGACCAGGTGTTCCTCTACATAGGAATGTATGCTGAGCAGCTTGAGATGCTGTCAATTGCGTTTGCTGGGGAGAGTGACAAGGGAATGCTGTATGTGTTGAATGGATGCAAGAAGCTTAGGAAGCTTGAGATCAGAGACTGCCCTTTCGGCAACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCATGCGAAGTGACCGTCGGAGCCTGCAAGCTGCTGGCCAAGAAGATGCCAAGGCTGAATGTGGAGATCTTCAATGAGAATGAGCAAGAGGATTGTAGTCTGGAAGATGGGCAGAGGGTAGAGAAGATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACCTTGTAG 1719 0.4724 MMNYFPDEVIEHIFDYVVSHRDRNALSLVCKSWYRIERFTRQRVFIGNCYSITPERLIQRFPGLKSLTLKGKPHFADFSLVPYDWGGFLCPWIEALAKSRVGLEELRLKRMVVSDESLELLSRSFTHFKSLVLVSCEGFTTDGLAAIAANCRFLRELDLQENEVEDHKGQWLSCFPDSCTSLVSLNFACLKGEVSLGALERLVARSPNLKSLKLNRSVPLDALQRIMMRAPQLADLGIGSFVHDPDSEAYIRLKNTILKCKSITSLSGFLEVAPHCLAAIYPICPNLTSLNLSYAAGIQGSELIKLIRHCGKLQRLWIMDCIGDKGLGVVAMTCKDLQELRVFPSAPYGNPAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILEALKPDPDTLEPLDEGFGAIVQSCRRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKLRKLEIRDCPFGNMALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNENEQEDCSLEDGQRVEKMYLYRTLAGKRKDAPEYVWTL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00767 572 Gene3D - 1 41 - -
Cca07g00767 572 SMART LRR_CC_2 475 500 IPR006553 -
Cca07g00767 572 SMART LRR_CC_2 284 309 IPR006553 -
Cca07g00767 572 SMART LRR_CC_2 426 449 IPR006553 -
Cca07g00767 572 SMART LRR_CC_2 125 150 IPR006553 -
Cca07g00767 572 SMART LRR_CC_2 366 390 IPR006553 -
Cca07g00767 572 SMART LRR_CC_2 100 124 IPR006553 -
Cca07g00767 572 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Cca07g00767 572 Gene3D Ribonuclease Inhibitor 42 572 IPR032675 -
Cca07g00767 572 Pfam F-box 3 42 IPR041567 -
Cca07g00767 572 PANTHER PROTEIN AUXIN SIGNALING F-BOX 3 3 569 - -
Cca07g00767 572 SUPERFAMILY RNI-like 17 532 - -
Cca07g00767 572 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 3 569 - -
Cca07g00767 572 SMART fbox_2 5 46 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00767 Cca-Chr7 12008537 12011864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00767 - - gmx:100812516 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00767 07 12008537 12011864 Cca07g00767 07 12008537 12011864 ECH