Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00720 ATGGCTTCTTCTCTCCTCCCAGGGCCCCACATTCCCACACCCCTCATCTCCAAACTCCACTCTTCCCCCAGAACATGGAGCCTCTTCATCCTCACATACCCTTTGCACCACAAAATCAAAAAACAAAATCTTTTACTCTTCCCCATCAATGCAGTGTACACCCCCAACCTCTACACCCCTTCTCCACCCTCCAAAACGGAGCCCCACATCGACCCCATCTCCCTCCTGAACGAGCGTATTCGCCGCGACTACAGCAAGAAGGAAGCTTTCAGAACGGTGATGGACTCGGAGGAGGCGGGGAAGTACATGAAGATGGTGAAGGAGCAGCAGCAGAGAGGGTTGCAGAAGCTCAAGGGCGATAGGGGGAGCAAAGATGGTGTCTTTAGCTACAAAGTGGACCCTTACACGCTTCGCTCTGGGGACCACGTTGTGCATAGGAAAGTGGGTGTTGGCAGGTTTGTGGGGATCAGGTTTGATGTGGCTAAGAACTCTTCGCAGCCCACTGAGTATGTGTTCATCGAGTATGCTGATGGCATGGCCAAGCTACCTGTCAACCAGGCTTCTAAAATGCTCTATAGATATAGTCTGCCAAATGAAACTAAGAAGCCTAGGACATTGAGCAAGCTGAGTGATACCAGTGCGTGGGAGAGAAGAAAGGTTAAAGGGAAGGTTGCGATACAGAAGATGGTTGTGGACCTTATGGAACTCTATCTACATAGGCTCAAACAAAGAAGGCCTCCCTATCCGAAGACTCCTGCAATGGCCAAATTTGAGGCTCAGTTTCCTTATGAACCCACACCGGATCAGAAAAAGGCTTTTATTGATGTTGAGAGGGATTTGACAGAGAGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTACGTGCTATCTTCTGTGTTGTCTCAGCTAAAAAGCAAGCAATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAGGTTGGACAGCTAAGCAGGTTTCAGACCAAAGCAGAGAAAGAAGAGCACTTGGACATGATTAAGAATGGTAGCCTGGATATTATTGTTGGGACTCATTCACTCCTAGGAGACCGTGTTGCATATAACAATCTTGGTCTGCTTGTGGTTGACGAGGAGCAGAGGTTTGGTGTCAAGCAGAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTATCCGCAACCCCTATACCACGAACTCTTTATTTGGCATTAACAGGGTTTCGTGATGCTAGTTTAATTTCAACTCCACCTCCGGAAAGAGTTCCCATCAGGACTCACCTTTCTTCATTCAGTGAGGACAAAGTAATATCAGCCATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTCTACCACGTATTAAAGGACTCAATGAAGTAATGGCATTTCTTGTTGAGTCATTTCCACATGTGGAAATAGCCATTGCCCATGGGAAGATATACTCGAAGCAATTAGAGGATACCATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCAGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAATACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGAGCAGATAAGGAAGCACATGCATATTTATTTTTCCCTGATAGAGGCCTGCTTTCTGATCAAGCATTGGAGAGGCTTGCTGCTATTGAAGAATGCCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAACAACAATCAGGAGATGTTGGAAATGTTGGTATTGATCTTTTTTTTGAGATGCTTTTTGAGAGCTTGTCCAAGGTTGAAGATCACCGTGTTCTTTCAGTTCCTTATCACTCTGTGCAGGTCGACATAAACATCAATCCTCATCTCCCTTCTGACTACATTAATTATCTGGAGAACCCTATCGAAATAATAAATGGAGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGCCACTATGGCAAAGAACCTCACTCCATGGAGATTTTACTAAAGAAGCTTTATGTGCGGAGAATGGCAGCTGATTTGGGGATAACCAGAATTTACACTTCAGGGAAGTTGATATTTATGAAAACAAACATGAATAAGAAGGTATTCAAGATGATGACAGAGTCCATGGCATCAGATTTACATAGAAATTCATTGGTTCTTGAGGGGGACCAAATTAAGGCTGAACTTCTATTAGAACTTCCAAAAGAACAACTTCTTAATTGGATCTTTCAATGTTTGGCTGAACTTCATGCTTCACTACCCTCCTTCATAAAGTACTAG 2457 0.4359 MASSLLPGPHIPTPLISKLHSSPRTWSLFILTYPLHHKIKKQNLLLFPINAVYTPNLYTPSPPSKTEPHIDPISLLNERIRRDYSKKEAFRTVMDSEEAGKYMKMVKEQQQRGLQKLKGDRGSKDGVFSYKVDPYTLRSGDHVVHRKVGVGRFVGIRFDVAKNSSQPTEYVFIEYADGMAKLPVNQASKMLYRYSLPNETKKPRTLSKLSDTSAWERRKVKGKVAIQKMVVDLMELYLHRLKQRRPPYPKTPAMAKFEAQFPYEPTPDQKKAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGQLSRFQTKAEKEEHLDMIKNGSLDIIVGTHSLLGDRVAYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIRTHLSSFSEDKVISAIKYELDRGGQVFYVLPRIKGLNEVMAFLVESFPHVEIAIAHGKIYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFFPDRGLLSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDHRVLSVPYHSVQVDININPHLPSDYINYLENPIEIINGAERVAEKDIWSLMQFTENLRRHYGKEPHSMEILLKKLYVRRMAADLGITRIYTSGKLIFMKTNMNKKVFKMMTESMASDLHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00720 818 Gene3D - 140 200 - -
Cca07g00720 818 SMART CarD_TRCF_2 136 238 IPR003711 -
Cca07g00720 818 Gene3D - 201 444 IPR027417 -
Cca07g00720 818 Pfam DEAD/DEAH box helicase 287 425 IPR011545 GO:0003676|GO:0005524
Cca07g00720 818 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 16 789 - -
Cca07g00720 818 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 617 IPR001650 -
Cca07g00720 818 SUPERFAMILY CarD-like 132 199 IPR036101 -
Cca07g00720 818 SMART helicmild6 489 573 IPR001650 -
Cca07g00720 818 Pfam Helicase conserved C-terminal domain 466 572 IPR001650 -
Cca07g00720 818 Gene3D - 137 651 IPR027417 -
Cca07g00720 818 SMART ultradead3 261 453 IPR014001 -
Cca07g00720 818 CDD DEXHc_TRCF 251 444 - -
Cca07g00720 818 Gene3D - 664 811 IPR037235 -
Cca07g00720 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 585 IPR027417 -
Cca07g00720 818 Pfam CarD-like/TRCF domain 137 237 IPR003711 -
Cca07g00720 818 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 16 789 - -
Cca07g00720 818 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 442 IPR014001 -
Cca07g00720 818 SUPERFAMILY TRCF domain-like 661 808 IPR037235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00720 Cca-Chr7 10892601 10910507 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00720 - - gmx:100805206 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00720 07 10892601 10910507 Cca07g00720 07 10892601 10910507 ECH