Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00717 ATGGCGCCATCCACCGCCGCCTCACCGCCCCCGCCGTTAGAAGAGGAGCCGTTACCTCACGACGGCGAAACTTACGACGTTAACGACGACGCCGCTTCTTTCGGCGACGTTCCACTGGACGACGAGGGTTTCCCGTCGCAACTCCCGGGACCGGAAACGGCGTCGGAAAAGAGCAGTTTCGCCGCCGATTTCTATCGCTGTGGAACCGATTGGTCCTCGTTGTTGTCGCCGGAAGAAAGTGGACGCAGCGATTCGGCGCATGATTCGGGGAAGAAGCTGAAGCAGGCCAATCTGTTTCAGATTTGGGGTTTCAAAAGAAACGACGCCGTTGGTTCCGTTGAATGTGGACCCAGTCGAAGTGGTTATTGTGATGACGGTGGTGCTTCTTCTGAGAGGAAGGCTGTGAAACCTGGAAATTGGGGTTCAATTTTGCGCGACACAGGGAAAGAAGAGTTCGAGAACACGAAATCTTCTCGCAAGAGGAAGGGTTTCGGTGGTGAAAATAGGGTTACGCGTTCCTGCCCCTTTTATAAGAAAATCCCAGGGACAACGTTCACTGTTGATGCTTTTCGTTATGGGTGTGTTGATGGCTGCTCGGCATATTTTCTTAGTCATTTCCACTGTGATCACTATGGTGGCCTTAGCAAGAAATGGTCGCATGGCCCTATATATTGCTCTCCTCTGACAGGCCGGCTTGTTCAAATGTGTCTCTCGGTAAATCCTTTGTATATCCACCCTTTGGAATTTAATACTGAACATGTGATTGATGGTGTCAAAGTGACTTTTTTAGAAGCTAATCACTGCCCTGGGGCAGCTTTGATTTACTTTGACCTCCCAAATGGTCAACGCTATTTGCACACTGGGGACTTTAGAGCGTGTAAACAAATGCAATCTTATCATCTTCTTGTAAATCAACGCGTGAATGTACTTTATTTGGATACCACATATTGCAACCCAAAATACATGTTCCCTTCCAAGCAAGATGTTCTCAATTATGTTGTTAAAATTACAAAGAACCACCTCAAATTGCATCCCAGAACTTTAGTAGTTGTTGGGGCATATAGTATTGGCAAAGAATGTGTATATCTTGCAATTTCTAAGGCTCTTGGGGTAAAAATTTATGCGAATGCTTCAAGGAGGCGGATTTTGCTAGCTTTTGGTTGGCCTGAACTTTCAGATAGTCTCTGTACGAAGGGAAATAACACACTTCTCCATGTTCTGCCCATGTCATCTTTGAGATTTGAGACCTTAAAGGATTACTTGAAGACCTACAAGGAGCAATTCACAGCAATTTTGGCGTTTCGTCCAACAGGTTGGACCTTCAGTGAGAAGACACGCAACGATCTGGAACTAATTAAACCTGTTTCCAAAGGAAATATCACGACGTATGGGGTTCCCTACAGTGAGCACTCCAGCTTCACAGAACTGCGAGATTTTGTTCAGTTTTTGAGGCCTGACAAGATAATCCCGACTGTGAATGCCGGGAATGCTGCTAATCGAGAAAAGATGCAATCCTACTTCCGAGACTGGTTGAAGGGCTAA 1542 0.4637 MAPSTAASPPPPLEEEPLPHDGETYDVNDDAASFGDVPLDDEGFPSQLPGPETASEKSSFAADFYRCGTDWSSLLSPEESGRSDSAHDSGKKLKQANLFQIWGFKRNDAVGSVECGPSRSGYCDDGGASSERKAVKPGNWGSILRDTGKEEFENTKSSRKRKGFGGENRVTRSCPFYKKIPGTTFTVDAFRYGCVDGCSAYFLSHFHCDHYGGLSKKWSHGPIYCSPLTGRLVQMCLSVNPLYIHPLEFNTEHVIDGVKVTFLEANHCPGAALIYFDLPNGQRYLHTGDFRACKQMQSYHLLVNQRVNVLYLDTTYCNPKYMFPSKQDVLNYVVKITKNHLKLHPRTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILLAFGWPELSDSLCTKGNNTLLHVLPMSSLRFETLKDYLKTYKEQFTAILAFRPTGWTFSEKTRNDLELIKPVSKGNITTYGVPYSEHSSFTELRDFVQFLRPDKIIPTVNAGNAANREKMQSYFRDWLKG 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00717 513 SMART Lactamase_B_5a 171 321 IPR001279 -
Cca07g00717 513 MobiDBLite consensus disorder prediction 146 168 - -
Cca07g00717 513 MobiDBLite consensus disorder prediction 146 167 - -
Cca07g00717 513 Gene3D - 322 470 - -
Cca07g00717 513 MobiDBLite consensus disorder prediction 1 15 - -
Cca07g00717 513 Pfam DNA repair metallo-beta-lactamase 390 495 IPR011084 -
Cca07g00717 513 Gene3D - 180 492 IPR036866 -
Cca07g00717 513 PANTHER DNA CROSS-LINK REPAIR PROTEIN SNM1 76 512 - -
Cca07g00717 513 MobiDBLite consensus disorder prediction 1 59 - -
Cca07g00717 513 SUPERFAMILY Metallo-hydrolase/oxidoreductase 196 506 IPR036866 -
Cca07g00717 513 CDD SNM1A-1C-like_MBL-fold 168 319 - -
Cca07g00717 513 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 76 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00717 Cca-Chr7 10862326 10866309 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00717 K15340 - gmx:100790844 885.945