Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00709 ATGGGCGCAAGCAGCGAGCCGACCCAGGAGGGGTCGGAGGAGCAGCAGAAGCGTTCGGAGATCTACACATACGAGGCCCCCTGGCACATCTACGCCATGAACTGGAGCGTCCGTCGAGACAAGAAGTACCGTCTGGCCATCGCCTCCCTCCTCGAGCAGTACCCCAACAGAGTAGAAATCGTCCAGCTCGACGACTCCAACGGCGAGATCCGCTCCGACCCCACCCTCTCCTTCGAGCACCCCTACCCGCCCACCAAGGCCATCTTCATCCCCGACAAGGACTGCCACCGCCCCGACCTCCTCGCCACCTCCTCCGACTTCCTCCGCGTCTGGCGCCTCCCCGACCCCGACGACCCCCACCCCCCCCGCGTCGAACTCAAGTCCCTCCTCAACGGCAACAAGAACAGCGACTACTGCGGCCCCCTCACCTCCTTCGACTGGAACGACGCCGAGCCCCGCCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAGAAGGAGACCGTCGACACCCAGCTCATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGCGGcgtcggcgtcttcgcctccgtctccgccgacggctccgtTAGGGTTTTCGACCTCCGCGACAAGGAGCACTCCACCATCATCTACGAGAGCTCCGAGCCCGACACCCCCTTGGTTCGCCTCGGCTGGAACAAGCAGGACCCCCGCTACATGGCCACTATCATCATGGATAGCGCCAAGGTTGTCGTCTTGGACATTCGCTTCCCCACGCTACCTGTCGTGGAGCTCCAGCGCCACCAGGCTAGTGTCAACGCTATTGCCTGGGCCCCCCATAGCTCCTGCCACATTTGCACCGCTGGGGATGATTCCCAGGCCCTCATCTGGGACTTGTCTTCCATGGGCCAGCCCGTCGAGGGCGGCCTTGACCCCATTCTCGCCTACACCGCTGGCGCCGAGATTGAGCAGCTTCAGTGGTCCTCCTCTCAGCCCGATTGGGTTGCCATTGCCTTCTCCACCAAGCTTCAGATTCTTAGGGTTTGA 1053 0.6059 MGASSEPTQEGSEEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPTLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRVWRLPDPDDPHPPRVELKSLLNGNKNSDYCGPLTSFDWNDAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00709 350 SMART WD40_4 71 112 IPR001680 GO:0005515
Cca07g00709 350 SMART WD40_4 171 209 IPR001680 GO:0005515
Cca07g00709 350 SMART WD40_4 260 300 IPR001680 GO:0005515
Cca07g00709 350 SMART WD40_4 123 168 IPR001680 GO:0005515
Cca07g00709 350 SUPERFAMILY WD40 repeat-like 44 308 IPR036322 GO:0005515
Cca07g00709 350 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Cca07g00709 350 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Cca07g00709 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 303 - -
Cca07g00709 350 PANTHER WD REPEAT CONTAINING PROTEIN 12 350 IPR045159 -
Cca07g00709 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 303 IPR001680 GO:0005515
Cca07g00709 350 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Cca07g00709 350 Gene3D - 10 349 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00709 Cca-Chr7 10689054 10690490 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00709 K11805 - gmx:100818850 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00709 07 10689054 10690490 Cca07g00709 07 10689054 10690490 ECH