Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00708 ATGCCGAGTTCTAAATCCCTTCTCCCTGTGTATACTTCATTCAAAGTGATAATAATAAATAAAGGTTATCCCAATTGCCCAGACATTAATGTTCCCTACTTGGGAACCCCAGGAACAAGAATTATCCGTTTTGGTCTTTCCTATGACCAATTGCTCATAAGGAAGCTAATTGAGCTTTCTTCCACTTTTGGCAAATTGAACTATGCCACTATGGTGTTTGATCAACTCAATTCCCCAGATACCTTCACCTGGAATGTCATGATCAGAGCTTGTACCATTAGTGGTTCTCCCAAAATGGCACTTCTTTTGTTCAAGGCCATGCTATGCCAGGGCTTGGCACCTGACAAGTTTACATACCCTTTTCTGATCAATGCCTGCATGGCCTCTTCTGCCCTTGGTTTTGGAAGAGTGGCCCATGCTCTGGCAATCAAAATGGGATTTTGGGGTGATCTCTATGTGCAGAACACCATGATGAATCTTTACTTCAAGTGTGAGAATGTTGATGGTGCGTGCAAGGTGTTTGATAAAATGCGTGTTCGCAATGTGTTCACTTGGACCACCGTGATTGCTGGCCTTGTTGCTTGCGGGAAATTGGATACTGCCCGGAAGCTATTTGAGAGGATGCCTTCCAAAAATGTTGTTGCTTGGACTGCAATGATTGATGGGTATGTGAAACACAAGCAACCCATTGAAGCCTTTAATCTGTTCGAAAGAATGCAGGTTGATGATGTGAGGCCAAATGAGTACACTCTGGTGAGTTTGGTCAGAGCTTGTACTGAGATGGGTAGCCTCAGGTTGGGTAGAAGGGTTCATGATTATGCTCTCAAGAATGGTTTTGAACTTGAGCCTTTCTTGGGTACCGCACTTATAGACATGTACAGCAAGTGTGACAGCTTGGATGATGCAAGGACAGTGTTTGACATGATGCAGGTGAGAACCTTGGCCACCTGGAATACAATGATCACTAGCTTGGGTGTGCACGGGTTTAGAGTTGAAGCCATATCACTTTTTGAAGAAATGGAAAAGGCAAATGAGGCTCCGGATGCTATCACTTTTGTAGGTGTTCTCAGCGCTTGCATTTATATGAATGACGTGGAACTAGCTCAGAAGTATTTCAATCTTATGACAGATCGTTATGGTATAACACCTATCTTGGAACACTATGAATGCATGGTTGAAATCTATACTCGTGCTTATAGGTTGGATGAGATTTACACGTTAGGGAACGCAATGGAATCAAATCATGATGTTGCAGAATTGCTCCGGAAGAGCAAACTCACTAGTATCAATGACATAAAAAAACTTATACTAAAGCAATACGGGGATGTGGCATTCTCAGAACTAGTTCTAGATCATTCCTCCACGAGCTCAAGTGGGACGCAGATTGATATCAACCAAACAAGTAAATAA 1410 0.4262 MPSSKSLLPVYTSFKVIIINKGYPNCPDINVPYLGTPGTRIIRFGLSYDQLLIRKLIELSSTFGKLNYATMVFDQLNSPDTFTWNVMIRACTISGSPKMALLLFKAMLCQGLAPDKFTYPFLINACMASSALGFGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDGACKVFDKMRVRNVFTWTTVIAGLVACGKLDTARKLFERMPSKNVVAWTAMIDGYVKHKQPIEAFNLFERMQVDDVRPNEYTLVSLVRACTEMGSLRLGRRVHDYALKNGFELEPFLGTALIDMYSKCDSLDDARTVFDMMQVRTLATWNTMITSLGVHGFRVEAISLFEEMEKANEAPDAITFVGVLSACIYMNDVELAQKYFNLMTDRYGITPILEHYECMVEIYTRAYRLDEIYTLGNAMESNHDVAELLRKSKLTSINDIKKLILKQYGDVAFSELVLDHSSTSSSGTQIDINQTSK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00708 469 Pfam PPR repeat 180 208 IPR002885 -
Cca07g00708 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Cca07g00708 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Cca07g00708 469 PANTHER BNAA06G32750D PROTEIN 38 427 - -
Cca07g00708 469 Gene3D Tetratricopeptide repeat domain 266 433 IPR011990 GO:0005515
Cca07g00708 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Cca07g00708 469 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 427 - -
Cca07g00708 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 211 IPR002885 -
Cca07g00708 469 Pfam PPR repeat family 315 359 IPR002885 -
Cca07g00708 469 Pfam PPR repeat family 211 258 IPR002885 -
Cca07g00708 469 Pfam PPR repeat family 79 126 IPR002885 -
Cca07g00708 469 SUPERFAMILY TPR-like 160 308 IPR011990 GO:0005515
Cca07g00708 469 Gene3D Tetratricopeptide repeat domain 43 133 IPR011990 GO:0005515
Cca07g00708 469 Gene3D Tetratricopeptide repeat domain 150 265 IPR011990 GO:0005515
Cca07g00708 469 TIGRFAM PPR: pentatricopeptide repeat domain 153 181 IPR002885 -
Cca07g00708 469 TIGRFAM PPR: pentatricopeptide repeat domain 183 214 IPR002885 -
Cca07g00708 469 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Cca07g00708 469 TIGRFAM PPR: pentatricopeptide repeat domain 316 349 IPR002885 -
Cca07g00708 469 TIGRFAM PPR: pentatricopeptide repeat domain 82 115 IPR002885 -
Cca07g00708 469 Pfam PPR repeat 287 311 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00708 Cca-Chr7 10677769 10679535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00708 69 418 Glycoside Hydrolase AT3G49170 25.852 1.14e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00708 - - gmx:100789790 752.666