Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00700 ATGGCTAGTGGTAGCAGAAATCCTCTTGTTGTTGGGCGTGTTATTGGAGAAGTAATAGACCCCTTTGAAAGTTCTATTCCTTTTAGGGTCACCTATGGCAATAGAGAAGTGAGCAATGGTTGTGAGTTTAAACCTTCACAAGTTGTCAAGCAACCCAGAGTGAGTGTTGGCGGAGATGACTTCAGGAACTTCCACACTATGGTCTTAGTGGATCCTGATGCTCCTAGTCCAAGTAATCCCAATTGCAGGGAGTACCTTCATTGGTTGGTGACTGATATTCCAGCGACCACAGGGGCTAGTTTCGGTAACGAGGTTGTAAGTTATGAAAGTCCACGACCCACGATGGGGATTCATCGTTTCGTATTTGTGTTGTTTCGTCAACAATATCGACAGAGGGTGTATGCTCCTGGATGGAGACAAAATTTCAATACTAGAGAATTTGCTGAACTTTACAATCTCGGATTACCAGTTGCTGCTGTCTTCTTCAACTGTCAGAGGGAAGCTGGCTCCGGTGGAAGCCGCCTCGCCGACTTCCGTCGCGCCGCCACCATTTGTCGCGCCGCCATGGAGCACGTGGTTGGACGGTTGCTCGATGGCCTCCCCCTAGAAGGCTTTGACTACGACTCCATCCTGGGACAATGCTGCAATATGTCGATCGACTTATTTGTTCAAATCCCAGTGGGCGTGGCCGGTCCTTTGCTCCTCGACGGGAAGGAGTACACCATTCCCATGGCCACCACCGAGGGATCGATGCCTCGTCGCCAGCACCAACCGTGGCCGCAAGGCCATTCATGCTTCCGGTGGCGCCTCCTCCATAGTCCTCCACGACACCATGACCAGAGCCCCTGTGGTTCGATTCTCCTCTGCCAAACGCGCCTCTGA 882 0.517 MASGSRNPLVVGRVIGEVIDPFESSIPFRVTYGNREVSNGCEFKPSQVVKQPRVSVGGDDFRNFHTMVLVDPDAPSPSNPNCREYLHWLVTDIPATTGASFGNEVVSYESPRPTMGIHRFVFVLFRQQYRQRVYAPGWRQNFNTREFAELYNLGLPVAAVFFNCQREAGSGGSRLADFRRAATICRAAMEHVVGRLLDGLPLEGFDYDSILGQCCNMSIDLFVQIPVGVAGPLLLDGKEYTIPMATTEGSMPRRQHQPWPQGHSCFRWRLLHSPPRHHDQSPCGSILLCQTRL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00700 293 CDD PEBP_euk 27 164 IPR035810 -
Cca07g00700 293 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 6 174 IPR035810 -
Cca07g00700 293 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 173 251 IPR002202 GO:0004420|GO:0015936
Cca07g00700 293 Pfam Hydroxymethylglutaryl-coenzyme A reductase 186 251 IPR002202 GO:0004420|GO:0015936
Cca07g00700 293 SUPERFAMILY PEBP-like 13 167 IPR036610 -
Cca07g00700 293 Gene3D - 226 252 IPR023074 GO:0004420
Cca07g00700 293 Gene3D - 2 170 IPR036610 -
Cca07g00700 293 PANTHER PROTEIN FLOWERING LOCUS T-RELATED 6 174 - -
Cca07g00700 293 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 195 251 IPR009029 GO:0015936|GO:0016616
Cca07g00700 293 Pfam Phosphatidylethanolamine-binding protein 65 159 IPR008914 -
Cca07g00700 293 Gene3D - 172 225 IPR023282 GO:0004420
Cca07g00700 293 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 242 262 IPR002202 GO:0004420|GO:0015936
Cca07g00700 293 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 215 236 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00700 Cca-Chr7 10466362 10470603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00700 173 251 Lipid Metabolism Gene Families AT1G76490 64.557 3.02e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00700 K16223 - gmx:100781509 328.176