Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00683 ATGATCAGAATCAGATCTAACTTACCCGTTTTCTCTGTTGTGCTATCACGCATCGGCCATAACTCACTCGCGTTTAATCACTGTCATGTAGTAGAGGAGCCCGTTATGAGTGCTATTTTCAATTTCTATAACCCTTTTAAGTCTGAAACTTTCTTTGCACTACCAAAATTTGGTTTCTCAGTTAGGCACTTCTCTGCTTCATCTTCAACCAGAAGCCTTGGGGTGGTAACTGATGCCCCTGCACATGAGGACTtgagtgatgatgatgatgataatgatggggatgaggatgaggatgatggtcatgGCAAAAAAAAACTACATTTAAGGGATGACGCTATTGCCCAAGATGTTAAAACCATTTTGGATATAATGCATGAAGTGGGTTCTGGACCATCTCAAATTAAGCACAAGCTTGAGCATTGCAGTGTTGTGCTATCATCAGAGGTGGTTGTGGAGGTCCTTTCGAGAACTCGCAATGATTGGGAAGCAGCTTTCACATTTTTCTTGTGGGCTGGCAAGCAACCTGGGTATGTTCATTCGGTTCGCGAGTACCATTCTATGATCTCTATCCTTGGCAAGATGAGGAAGTTTGATACTGCTTGGACATTAATTGAGGAAATGAGAGGAGGTAGAACTGGTCCATCTCTTGTCACTCCTCAAACCTTGTTGATTATGATCAGGAGATACTGTGCTGTACATGATGTTGCAAGAGCTATCAATACTTTCTATGCTTATAAACAGTTTAACTTTCATGTTGGGCTAGAGGAATTTCAAAGCCTTCTTTCTGCCCTTTGTCGGTATAAGAATGTGCAAGATGCTGAACACTTACTGTTCTGCAACAAGAATGTATTCCCACTTGACATCAAAAGCTTTAACATCATTCTGAATGGATGGTGTAATTTGATTGTTAGTGTTTCTCAGGCAGAAAGAATATGGCAGGAGATGTGCAAGAGAGGGATCCAACACGATGTTGTCTCCTATGCAAGTATCATATCTTGCTATTCAAAATCTTCTAGACTTTATAAGGTGCTCAGGATGTTTGATGAGATGAAGAAAAAGAAGATCACTCCAGATAGGAAGGTTTATAATGCAGTCATTTTTGCTCTTGCAAAGGGTAGGCTTGTGAAAGAAGCTGCCAATATCATTGCAACAATGGAAGAGAACAATGTAACTCCAGATGTTGTTACTTACAACTCCCTGATCAAGCCTCTCTGCAAGGCCCACAAAGTTGATGAAGCAAAACAACTTTTTGATGAGATGCTGGAGCGGCGCCTATCCCCGACAATTCAAACTTTTCATGCTTTCTTCCGTATGTTAAGGACCAAGGAAGAAGTATTTGAGCTCTTGGACAAGATGAAAGAGCTGGGATGCTACCCAACCATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCCAGCTTGATGATGTATTCAAGATATGGGATGCAATGAGAGAAGATGGCATCAGCCATGATCGAAGTTCTTATATAGTACTGATTCATGGGCTGTTTCTCAATGGAAAGTTGGAGCAAGCATACAGATATTATGCAGAGATGCAAGAGAAAGGCTTCCTTCCTGAACCAAAGACTGAAGAAATGCTTCAGGCATGGGTTTCTAGGAAACCGGCAATAGAGGGCCAGGAGACAGATTTAGAACCTAATCAACTGGAAAATGATACTCTTAAAAAGAAAGTGAAGGCCGTACCAAGTAAATTTGACAGGGAAAAAGCTTATCTTCAGGAACCTGAGACCAGAAGAGTAACAAGAGAACGGGGTTTTTCTTTTTGGGAGCAGTAA 1809 0.3997 MIRIRSNLPVFSVVLSRIGHNSLAFNHCHVVEEPVMSAIFNFYNPFKSETFFALPKFGFSVRHFSASSSTRSLGVVTDAPAHEDLSDDDDDNDGDEDEDDGHGKKKLHLRDDAIAQDVKTILDIMHEVGSGPSQIKHKLEHCSVVLSSEVVVEVLSRTRNDWEAAFTFFLWAGKQPGYVHSVREYHSMISILGKMRKFDTAWTLIEEMRGGRTGPSLVTPQTLLIMIRRYCAVHDVARAINTFYAYKQFNFHVGLEEFQSLLSALCRYKNVQDAEHLLFCNKNVFPLDIKSFNIILNGWCNLIVSVSQAERIWQEMCKRGIQHDVVSYASIISCYSKSSRLYKVLRMFDEMKKKKITPDRKVYNAVIFALAKGRLVKEAANIIATMEENNVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLERRLSPTIQTFHAFFRMLRTKEEVFELLDKMKELGCYPTIETYIMLIRKFCRWRQLDDVFKIWDAMREDGISHDRSSYIVLIHGLFLNGKLEQAYRYYAEMQEKGFLPEPKTEEMLQAWVSRKPAIEGQETDLEPNQLENDTLKKKVKAVPSKFDREKAYLQEPETRRVTRERGFSFWEQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00683 602 MobiDBLite consensus disorder prediction 77 106 - -
Cca07g00683 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cca07g00683 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 52 592 - -
Cca07g00683 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Cca07g00683 602 Pfam Pentatricopeptide repeat domain 311 368 IPR002885 -
Cca07g00683 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 323 IPR002885 -
Cca07g00683 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Cca07g00683 602 Pfam PPR repeat family 393 440 IPR002885 -
Cca07g00683 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Cca07g00683 602 PANTHER OS01G0816000 PROTEIN 52 592 - -
Cca07g00683 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Cca07g00683 602 MobiDBLite consensus disorder prediction 83 97 - -
Cca07g00683 602 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Cca07g00683 602 TIGRFAM PPR: pentatricopeptide repeat domain 499 530 IPR002885 -
Cca07g00683 602 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Cca07g00683 602 TIGRFAM PPR: pentatricopeptide repeat domain 464 496 IPR002885 -
Cca07g00683 602 TIGRFAM PPR: pentatricopeptide repeat domain 185 209 IPR002885 -
Cca07g00683 602 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Cca07g00683 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Cca07g00683 602 Gene3D Tetratricopeptide repeat domain 304 444 IPR011990 GO:0005515
Cca07g00683 602 Pfam PPR repeat 464 493 IPR002885 -
Cca07g00683 602 Pfam PPR repeat 499 528 IPR002885 -
Cca07g00683 602 Pfam PPR repeat 185 209 IPR002885 -
Cca07g00683 602 Gene3D Tetratricopeptide repeat domain 445 551 IPR011990 GO:0005515
Cca07g00683 602 Gene3D Tetratricopeptide repeat domain 133 301 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00683 Cca-Chr7 10000551 10002359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00683 185 553 Glycosyltransferase AT1G05670 26.596 1.58e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00683 - - gmx:100785546 1015.76