Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca07g00669 | ATGGCAATTGCACGCACCGGAGTCTACGTTGATGACTATTTGGAGTACGCGAGCACATTACCCGCTGAGCTTCAGAGACTGCTCAACACTGTAAGAGAACTCGATGAACGATCCCAATCTATGATAAACCAGACCAGGCAGCAAACGAAGTACTGTGTGGGGTTCTCATCACATGGCTCTAAGAAGGGCAATCACAATTATAATAACAATTATGGGAATGAGGACGATGATGCTGCTATTGAAAAAATGCGAAAAGAGATCGAGGCAAATCAGGATAGTGCATTGAGTCTATGCACTGAGAAGGTTTTGTTGGCACGACAAGCATATGACCTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTTGCTGAAGATTTAAAGCAAGAGGGTAAAATACCACCTGATGAACCAGCAATTCTTCCCCCATTGCCTATAGTCCCTAAAGCTGAAAAGCGCAAGCCCATATACATAACTCCTCAATCAAAGAGACTTGATTatagggatagagattgggatagagagcgtgatagggaCTTCGAGCTAATGCCTCCACCAGGAAGTCATAAGAAGGAGTATGCTACCCCGATGGATGTTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCTTTTGGAGATATGATTGCTTGTGACAATGAAAATTGCCAAGGAGGTGAATGGTTCCACTACTCATGTGTTGGCCTAACGCAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCGAATTACTCCCACAATGTCAAAGATGA | 807 | 0.4089 | MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCVGFSSHGSKKGNHNYNNNYGNEDDDAAIEKMRKEIEANQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKAEKRKPIYITPQSKRLDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCELLPQCQR | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca07g00669 | 268 | SMART | ING_2 | 9 | 126 | IPR024610 | - | |
| Cca07g00669 | 268 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 205 | 262 | IPR013083 | - | |
| Cca07g00669 | 268 | Coils | Coil | 24 | 44 | - | - | |
| Cca07g00669 | 268 | SUPERFAMILY | FYVE/PHD zinc finger | 188 | 261 | IPR011011 | - | |
| Cca07g00669 | 268 | PANTHER | PHD FINGER PROTEIN ING2 | 2 | 263 | - | - | |
| Cca07g00669 | 268 | PANTHER | INHIBITOR OF GROWTH PROTEIN | 2 | 263 | IPR028651 | - | |
| Cca07g00669 | 268 | Pfam | Inhibitor of growth proteins N-terminal histone-binding | 9 | 126 | IPR024610 | - | |
| Cca07g00669 | 268 | SMART | PHD_3 | 213 | 261 | IPR001965 | - | |
| Cca07g00669 | 268 | ProSiteProfiles | Zinc finger PHD-type profile. | 211 | 263 | IPR019787 | - | |
| Cca07g00669 | 268 | Gene3D | - | 5 | 124 | - | - | |
| Cca07g00669 | 268 | CDD | ING_plant | 17 | 123 | - | - | |
| Cca07g00669 | 268 | CDD | PHD_ING | 213 | 260 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca07g00669 | Cca-Chr7 | 9701725 | 9707801 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca07g00669 | K11346 | - | gmx:100787916 | 505.368 |