Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca07g00663 | ATGAGGCCCCCGAGAGGCGCAGGACGCGGTGGTGGTTTTAGAggtggccgcgacggtggcggtttcagaggtggtcgcgacggtggaggccgcggcagaggtggttttggtcgtggcggtggaggacgcggcggcggATTTCGCGATGAAGGGCCACCCTCCGAAGTCGTAGAGGTGTCGCAGTTTCTGCATGCGTGTGAGGGAGATGCTGTAACGAAGCTTACGAATGAGAAAGTTCCCTTTTTCAATGCTCCCATATATCTGAAAAACATGACTCAGATTGGGAAAGTTGATGAAATATTTGGCCCCATCAATGAAGCTTACTTCTCAATTAAAATGATGGAAGGGATTGTTGCTACCTCTTATGCAGCCGAAGACAAGTTTTATATTGACCCAAGGAAACTGTTGCCTCTTGCAAGATTTCTTCCACAACCCAAGGGACAATCACAAggtggtagaggcggaggtggaggaggtcgtggtggccgtggaggtggtggccgtggaggtggtggttttcgtggaaggggtggcccaaggggtggtagaggtggtcctcctcggggtggtggccgcggtggtggtTTCAGGGGAAGGGGGAGATCATAG | 609 | 0.2874 | MRPPRGAGRGGGFRGGRDGGGFRGGRDGGGRGRGGFGRGGGGRGGGFRDEGPPSEVVEVSQFLHACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVATSYAAEDKFYIDPRKLLPLARFLPQPKGQSQGGRGGGGGGRGGRGGGGRGGGGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRS | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca07g00663 | 202 | Gene3D | Probable tRNA pseudouridine synthase domain | 52 | 143 | IPR038664 | - | |
| Cca07g00663 | 202 | Pfam | Gar1/Naf1 RNA binding region | 56 | 142 | IPR007504 | GO:0001522|GO:0042254 | |
| Cca07g00663 | 202 | SUPERFAMILY | Translation proteins | 57 | 131 | IPR009000 | - | |
| Cca07g00663 | 202 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Cca07g00663 | 202 | PANTHER | NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 | 1 | 201 | - | - | |
| Cca07g00663 | 202 | MobiDBLite | consensus disorder prediction | 143 | 202 | - | - | |
| Cca07g00663 | 202 | PANTHER | H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT | 1 | 201 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca07g00663 | K11128 | - | gmx:100788981 | 212.616 |