Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00639 ATGAGAGTGAGAAGAGACCGTGTTTTTATAACAAAGTTGTTGCTTCCAGTGACATCCGAGGCAAGCTTCCCTTTCCACATAAATTCAAGTTACAAGGGTCTGCAGGAAATGGCTAAAATCTCCATCTTGTTTGTGGGGCTGTGGCTACTAGTTAACTGGGCAGGGTTGTTGGATGCAGAACACATGAACATGAAGTACAAGGACCCTAAACAGTCAATTGATACCAGGGTTGAGGATCTTGTTAGCCGGATGACCCTTGAGGAGAAAATTGGCCAAATGTTGCAGATTGAACGCAAGTATGCATCTGCTGATTTGGTTAAGAAGTACTTTATTGggagtgtaatgagtgagggagggagtATTCCAGTTCCACAGGCTTCTGCTGAAACCTGGATTAACATGGTGAATGAATTTCAGAAGGTTGCTTTATCAAGCCGGCTTGGAATTCCGGTGTTTTATGGGATTGATGCCGTTCATGGCCACAACACTGTTTACAAAGCTACTATTTTTCCTCACAATATTGGTCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCTCTTGAAGTTAGAGCAACAGGAATCCAATATGTTTATGCACCTTGCATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATCCTAAACTAGTTCAAGCTATGACTGAAATCATACCAGGATTGCAAGGGGACATACCCGATAATTTACCAAAGAGTGTCCCTTTTATCAGTGGGAAAGAAAAAGTTCTAGCTTGTGCTAAGCATTACGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGAACAACACTTATTTTATTCTCTCTGTTTTTGCTGCTGCCTTCATTCCTTAA 894 0.4105 MRVRRDRVFITKLLLPVTSEASFPFHINSSYKGLQEMAKISILFVGLWLLVNWAGLLDAEHMNMKYKDPKQSIDTRVEDLVSRMTLEEKIGQMLQIERKYASADLVKKYFIGSVMSEGGSIPVPQASAETWINMVNEFQKVALSSRLGIPVFYGIDAVHGHNTVYKATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYVYAPCIAVCRDPRWGRCYESYSEDPKLVQAMTEIIPGLQGDIPDNLPKSVPFISGKEKVLACAKHYVGDGGTINGIDENNTYFILSVFAAAFIP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00639 297 PRINTS Glycosyl hydrolase family 3 signature 216 232 IPR001764 GO:0004553|GO:0005975
Cca07g00639 297 PRINTS Glycosyl hydrolase family 3 signature 170 189 IPR001764 GO:0004553|GO:0005975
Cca07g00639 297 PRINTS Glycosyl hydrolase family 3 signature 146 162 IPR001764 GO:0004553|GO:0005975
Cca07g00639 297 PRINTS Glycosyl hydrolase family 3 signature 262 278 IPR001764 GO:0004553|GO:0005975
Cca07g00639 297 Gene3D - 60 289 IPR036962 GO:0004553|GO:0005975
Cca07g00639 297 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 41 285 - -
Cca07g00639 297 Pfam Glycosyl hydrolase family 3 N terminal domain 85 278 IPR001764 GO:0004553|GO:0005975
Cca07g00639 297 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 41 285 - -
Cca07g00639 297 SUPERFAMILY (Trans)glycosidases 64 285 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00639 Cca-Chr7 9284835 9289695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00639 36 284 Glycoside Hydrolase AT5G20950 68.273 3.05e-120 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00639 K05349 - gmx:100779642 466.463