Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00636 ATGGATGTAGTGCTTTCCCCCCAAATACAGAAAGGTCGCAAAACTTTATGTGCTGGGTCACAGAAGGATCTATGGCTTGTTGTGCGAGAAGGATCTCTAAATGATGTAGAGGTGACCTTGACATCATTGAAGAAGAGTGGGGGCAATATCAATTTGAGGAACACCTTTGGGCTGACTCCTCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTTGCTGCTGGTGCCGACCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGCGGCAAGCATCCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCCAAATCTCGAATACCTGTAGATCTATTCTCTGGCTCTGTATTTCAGGTTCTTGGAAATGAACACAGTTCAGTGGCTACTGAGGTCTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCACATTCAGAAGTTACCATGCAAAGTTGATTCACTTGGTGGTTCATTCATAAAGCTAATTTCTGCAGGGAAATTCCATAGTGTTGCACTTACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTAACTTCTGGTTTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTTATTGCTACTCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAATTGTCGCTGTTGCTGCCGCAAACAAACACACAGCTGTAGTTTCTGATTTAGGTGAAGTCTTTACTTGGGGTTGCAATAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTGACCAGGGTCTCTGCTGCAAAATATCATACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTTGTTAGTAGGAACTTAAAGAAAAGTGGGACTACTCCTTTAAAATTTCACCGCAAGCAACGGCTTAATGTGGTTTCTATAACTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTTTCCTCAGATCCTGATCTTAGATGCCAACAGTTATATTCTATGTGTGGAAGAAATATGGTGAGCATATCAGCCGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTATATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTAGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGTGAAACACATGTACTAATTGTGGCTTCACTCTATCATCCTGTCTACCCTCCCAACATGATCAAGAATTCTCAGGAACTCAAGTTGAATAACAAGGATGATATGGAGGAGTTAAATGAAGACATTTTATTTGAAGATATGGATTCCAGTAACATGATATCTAGTGTACAAAATGATACTTTCAGGCAGAGATCTATACCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCAGAGTGTCTAGTTGAGCCACGGAATGCCTTGCAACTTCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTATATATTTACAGTTTCGTCACATACTGTAGCAAGTGCCTCACCAGATATTCTGGCTAACCTTGAGAGATTGTTAGACCAGAGATCATCTGAGCCATGGAGCCACCGTCGGCTCCCTACTCCAACTGCTACTTTCCCTGCCATCATTAACAGTGAAGAGGATGATAGTGAGGTAGAGTTTCAAAGGATTCGTGACAAACCTTTGTCTGCCATGAAATTGGAGAAAGTCCAAGGACTAGATTCCTTTCTGCAGCCCAAGGATGATCCTAATAAAGAAATCTCCAAGGTAATCCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGCTAAGCAGTCTAATGGACATCTTCTCGATGACCAGCAGATTGCAAAGCTTCAATCGAAGTCAGCACTTGAGAGCTCACTTGCTGAGCTTGGTGTTCCTGTTGAGACATCAGATTTACCAGAAGGGAAAGGTAATAAGAAGGGTAAATTATTGAAAAAACAAAGGAGAAAGAGTGGCAAATCAAGTGTAGAGCAGGCAGAATTAGAATCTGTTTACTCTAAAAGTGAAGCCATTCCCAAATCGGAGGACCTGTTGGACATTGACATCATGAGGGTTCCTGATACGAAGGTGGTGGAAGAAGAGGATACTATCTGTGAACAGATCACAGCAGACCAGGGTGCAAAAGATTTAGCTTTTGTTGTGCAGAAGAAAGATGGTTTAGAGTTGCTGAAAGCCAAGGGTCAGTCTCCAAGGGCTTCAAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGCGCACTTGATGAAGCCCCGAAAGAGGTGGCTCCCCCTCCTCCACCAACACCAAGAAATGATGGTCCTGCATGGGGTGGGGCCAAGTTCACCAAGGGTTCTGCTTCTCTTCGCGAAATCCAGGATGAACAAAGCAAAATAAAAGTAAACAAGCTGCCCGGGACCAAAGATAAGGTGGAAGATCTTTCTGATCTTGGCAGTGGGGTGAAGATAAAGTTGAGTTCATTGCTTCCTTCCAGCCCAATACCTGTTACCTCAACTCGTAGTTCCCAGGCATCTGAGGGAGAAATAAGTACCCCTCCTTGGGCTGCTTCAGGAACTCCTCCCCATCCTACTAGGCCATCGTTGAGGGACATCCAAATGCAACAGGGAAAGAAACAACAATGCCTTTCACACAGTCCAAAGACCAGAACAGCCGGATTTTCCATCCCTACCAGCCAAGGTTCACCGTCCGAAACCACCACCGGTGTGAGCCGCTGGTTCAAGCCTGAAGTGGAAACTCCATCCTCGATTCGATCTATCCAAATCGAGGAAAAGGCAATGAAAGATCTCAAGCGCTTCTACAGCAGTGTCAAGATTGTCAGAAAGCAGCAAGCTTGA 3219 0.4498 MDVVLSPQIQKGRKTLCAGSQKDLWLVVREGSLNDVEVTLTSLKKSGGNINLRNTFGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAAASILLQHGASITLEDSKSRIPVDLFSGSVFQVLGNEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGTTPLKFHRKQRLNVVSITAGMVHSMALTDDGALFYWVSSDPDLRCQQLYSMCGRNMVSISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHVLIVASLYHPVYPPNMIKNSQELKLNNKDDMEELNEDILFEDMDSSNMISSVQNDTFRQRSIPSLKSLCEKVAAECLVEPRNALQLLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHTVASASPDILANLERLLDQRSSEPWSHRRLPTPTATFPAIINSEEDDSEVEFQRIRDKPLSAMKLEKVQGLDSFLQPKDDPNKEISKVIRAIRKKLQQIEMLEAKQSNGHLLDDQQIAKLQSKSALESSLAELGVPVETSDLPEGKGNKKGKLLKKQRRKSGKSSVEQAELESVYSKSEAIPKSEDLLDIDIMRVPDTKVVEEEDTICEQITADQGAKDLAFVVQKKDGLELLKAKGQSPRASKKKSKKGGLSMFLSGALDEAPKEVAPPPPPTPRNDGPAWGGAKFTKGSASLREIQDEQSKIKVNKLPGTKDKVEDLSDLGSGVKIKLSSLLPSSPIPVTSTRSSQASEGEISTPPWAASGTPPHPTRPSLRDIQMQQGKKQQCLSHSPKTRTAGFSIPTSQGSPSETTTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQQA 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00636 1072 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 186 196 IPR000408 -
Cca07g00636 1072 MobiDBLite consensus disorder prediction 951 973 - -
Cca07g00636 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 309 IPR000408 -
Cca07g00636 1072 MobiDBLite consensus disorder prediction 912 938 - -
Cca07g00636 1072 SUPERFAMILY RCC1/BLIP-II 401 501 IPR009091 -
Cca07g00636 1072 PRINTS Chromosome condensation regulator RCC1 signature 149 165 IPR000408 -
Cca07g00636 1072 PRINTS Chromosome condensation regulator RCC1 signature 183 196 IPR000408 -
Cca07g00636 1072 PRINTS Chromosome condensation regulator RCC1 signature 202 218 IPR000408 -
Cca07g00636 1072 PRINTS Chromosome condensation regulator RCC1 signature 259 275 IPR000408 -
Cca07g00636 1072 PRINTS Chromosome condensation regulator RCC1 signature 296 312 IPR000408 -
Cca07g00636 1072 PRINTS Chromosome condensation regulator RCC1 signature 312 326 IPR000408 -
Cca07g00636 1072 PRINTS Chromosome condensation regulator RCC1 signature 409 427 IPR000408 -
Cca07g00636 1072 Gene3D - 137 381 IPR009091 -
Cca07g00636 1072 MobiDBLite consensus disorder prediction 989 1031 - -
Cca07g00636 1072 Coils Coil 514 534 - -
Cca07g00636 1072 ProSiteProfiles Ankyrin repeat region circular profile. 90 121 - -
Cca07g00636 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 363 IPR000408 -
Cca07g00636 1072 Pfam Ankyrin repeats (3 copies) 42 121 IPR002110 GO:0005515
Cca07g00636 1072 MobiDBLite consensus disorder prediction 753 781 - -
Cca07g00636 1072 MobiDBLite consensus disorder prediction 851 1031 - -
Cca07g00636 1072 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Cca07g00636 1072 Coils Coil 701 721 - -
Cca07g00636 1072 Gene3D - 16 136 IPR036770 -
Cca07g00636 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 258 IPR000408 -
Cca07g00636 1072 ProSiteProfiles Ankyrin repeat region circular profile. 56 87 - -
Cca07g00636 1072 SMART ANK_2a 56 85 IPR002110 GO:0005515
Cca07g00636 1072 SMART ANK_2a 90 119 IPR002110 GO:0005515
Cca07g00636 1072 Gene3D Potassium Channel Kv1.1; Chain A 533 613 IPR011333 -
Cca07g00636 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 149 196 IPR000408 -
Cca07g00636 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 259 306 IPR000408 -
Cca07g00636 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 310 360 IPR000408 -
Cca07g00636 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 200 254 IPR000408 -
Cca07g00636 1072 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 1070 - -
Cca07g00636 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 148 199 IPR000408 -
Cca07g00636 1072 SUPERFAMILY Ankyrin repeat 36 130 IPR036770 -
Cca07g00636 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 364 419 IPR000408 -
Cca07g00636 1072 SUPERFAMILY RCC1/BLIP-II 112 425 IPR009091 -
Cca07g00636 1072 ProSiteProfiles Ankyrin repeat profile. 90 122 IPR002110 GO:0005515
Cca07g00636 1072 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 10 1070 - -
Cca07g00636 1072 Gene3D - 382 506 IPR009091 -
Cca07g00636 1072 CDD BACK 577 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00636 Cca-Chr7 9230189 9240888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00636 27 130 Acyl Lipid Metabolism Gene Families AT5G53470 33.654 4.86e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00636 K24810 - gmx:100800604 1861.66