Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00622 ATGGACTTCGATCACCACCTCGCGGAGCTTTCCTCTTCCTCGCCATGCATTCCCTCCGGCGAGGACTTCCATTTCTACTACAAATTCAAGGAGTTCCGAGGCCCGATCGAGGAAATCGCGAGGAGGACGCAGTCAATGCTCGATAAAATCGGTTCCGCCGAGAATATTTGGGGCAGAGGCTCGGCGTTTCCCAGTGATGTCGACGACGCGTACGAGTGGCTTGTGAATGCGAACGAGGACGTTTTGGATCTGGTTGAAGAGTTGGTGGATGAGTTGCGGATGATTAAGAAAGATGGCGGAGAAGAATGTGAAAATGGGTTTGGGCAGAAAACGAAAGTGTCGTTTCATATACCGACGATTAAGAAGCCTCAGTACGCGTACAACATTGTGGTGAATAATGCAAACCAGCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGATGATGGTCAGAGGTTTATTCATCCACTGGAGAAACTCTCGGCTTTGGATTTTGTTGATAAAGAAAATCTTGAGAATCTTGTGCCAGTAAAGCCTCCCTCAATGGAATGCACCCCTTTCAAGTTTGTGGAGGATGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTATCTTCGGTTAATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACTAGGAATGAAGATTTTATTATAGATACTCTGAAGGTCCGCAATCATGTTGGGCCATACCTGAGGGAAGTTTTCAAGGACCCTACCAAGAAGAAGGTTCTGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTACGTTTGTAATATGTTTGATACTGGCCAGGCTTCAAGAGTGTTAAAGATGGAGAGATATAGTCTGCAATATCTTTTGCAACACTTTTGTGGGGTTACTGCAAACAAAGAATACCAAAATGCAGATTGGAGAATACGCCCTCTTCCTGAAGTGATGCTAAGATATGGCAGAGAAGATACACACTATCTGCTTTATATATACGATTTAATGAGGATCAGATTATTTACACTGTCTAAGGAATCTGAAGGTTCTGATAATCTTCTGCTGGAGGTTTACAAACGCAGTTATGATATCTGCATGCACCTATATGAGAAAGAGCTGCTGACAGAAGACTCGTACCTTCATATATATGGGTTGCGAGGAGCTGGTTTTAATGCTCAACAGCTTGCTGTTGTTTCAGGACTTTGTGAATGGCGTGATGGTCTTGCTCGTGCAGATGATGAGAGTCCTGGCTATGTATTGCCTAATAAAATTATTCTTGAAATCGCTAAGCAGATGCCTGTCATTATAAGCAATCTACGGAGAATTGTAGGAAAGTCCAAGCTCCCATATGTTGAGCGCAGCCTTGATGTCATTGTCAACATTGTTAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGACTGCACTACGTTTGAAAGAAGAACATGCAGCAAGTTTGTCAAATGTAGTACCTGTTAAGGATGGAACTGAAGTACCTCAGACGCTAGTTGGATGTGCAACAACAGGAAACATTGGAATTGAGAATGACACCCGTGTTGATATCTCGGAAGTTGGTCTGTTATCTTCTGACCTGGAGGAGGAAACTTTTCAGCATCAAGATAAAGATGGACAAGGAAAACTTAAATCCGTTAGTCTCACTTCAGATCTACCAAGGGTCAGGCTCACTATTCCAGAGAAGAATAAGGATGATGCAAATGTAATTGCACGCACTACAGCGAAGGCCAATGGAGAGGTGACAAAAATGCCCACTGGCGCTTTTGATGCTGCACTGCTGGACAATTCTGCTTCAGAATGGAAGCGTGATCGTAATAAAAAGGGCAAGGAAGAGATCAAGCTAGAAAAGATTAAATCATCAGTCAATGTTCCATCCCACTTGTTTTTGGGCAACAGTGAGAAGTCAAAAGTAGTTGTAGAAACTCCAAGTGTAGCATCTAAAATATCAGACACCCAGAAACCCGTTTCAGGTTCAGTTTCTGCTTCCAGACCCTGTGGGATTGTAATGGTGTGCTCTGATTCAGACTCGGAGGATATGCTACAGAATAAGCTAGAAAACTCCAACAATCAGCCGGGGGAGAATTCTCTTGTGCCCAGGAAAAGAAGATGA 2169 0.4343 MDFDHHLAELSSSSPCIPSGEDFHFYYKFKEFRGPIEEIARRTQSMLDKIGSAENIWGRGSAFPSDVDDAYEWLVNANEDVLDLVEELVDELRMIKKDGGEECENGFGQKTKVSFHIPTIKKPQYAYNIVVNNANQPFEHVLLEKSDDGQRFIHPLEKLSALDFVDKENLENLVPVKPPSMECTPFKFVEDVKGLKELAAKLSSVNEFAVDLEHNQYRSFQGLTCLMQISTRNEDFIIDTLKVRNHVGPYLREVFKDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKMERYSLQYLLQHFCGVTANKEYQNADWRIRPLPEVMLRYGREDTHYLLYIYDLMRIRLFTLSKESEGSDNLLLEVYKRSYDICMHLYEKELLTEDSYLHIYGLRGAGFNAQQLAVVSGLCEWRDGLARADDESPGYVLPNKIILEIAKQMPVIISNLRRIVGKSKLPYVERSLDVIVNIVRHSMQNAAAFEETALRLKEEHAASLSNVVPVKDGTEVPQTLVGCATTGNIGIENDTRVDISEVGLLSSDLEEETFQHQDKDGQGKLKSVSLTSDLPRVRLTIPEKNKDDANVIARTTAKANGEVTKMPTGAFDAALLDNSASEWKRDRNKKGKEEIKLEKIKSSVNVPSHLFLGNSEKSKVVVETPSVASKISDTQKPVSGSVSASRPCGIVMVCSDSDSEDMLQNKLENSNNQPGENSLVPRKRR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00622 722 CDD Rrp6p_like_exo 182 374 - -
Cca07g00622 722 SUPERFAMILY HRDC-like 390 481 IPR010997 GO:0000166|GO:0044237
Cca07g00622 722 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 598 673 IPR045092 GO:0000175|GO:0000467
Cca07g00622 722 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 571 IPR045092 GO:0000175|GO:0000467
Cca07g00622 722 Pfam 3'-5' exonuclease 188 351 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cca07g00622 722 ProSiteProfiles HRDC domain profile. 405 486 IPR002121 GO:0003676
Cca07g00622 722 Gene3D HRDC domain 394 488 IPR044876 -
Cca07g00622 722 SMART hrdc7 405 485 IPR002121 GO:0003676
Cca07g00622 722 PANTHER 3'-5' EXONUCLEASE 598 673 - -
Cca07g00622 722 PANTHER 3'-5' EXONUCLEASE 1 571 - -
Cca07g00622 722 SMART 35exoneu6 186 355 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cca07g00622 722 MobiDBLite consensus disorder prediction 697 722 - -
Cca07g00622 722 Gene3D - 111 393 IPR036397 GO:0003676
Cca07g00622 722 SUPERFAMILY Ribonuclease H-like 120 385 IPR012337 -
Cca07g00622 722 Pfam HRDC domain 408 461 IPR002121 GO:0003676
Cca07g00622 722 MobiDBLite consensus disorder prediction 697 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00622 Cca-Chr7 8955917 8985871 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00622 K12591 - gmx:100804872 977.622