Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00605 aTGCTAGCATGTCCTAGCAGCTCCCTCCATGGCCTCGCCGCACTGCAACGCCATTCCCAACCCTCTCACTTCCTCCTCTCCAAGCCTCTCCTCTTCCCTCCTTCCTCTCGCTTCGCAGCTTCCCGCAAATGCAACTTCCGTTCCCTCCTTTCCACCGCTCGCCGCCGCTCCCGCGTCAGAGCTTCCGCCGAGGTGACGGACTCCGTCGTCGGCGATGGTGGCGTCCTGGAACCGTATTCCGTGAAGATTCCCGTCGGTGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCAAATGGCTCTGTTACAGTTACAGATGGAGAGACTATTGTGTACACAACTGTTTGCTTGGATGATGTTCCTACTGAACCGTCTGATTTTTTCCCTCTTTCTGTTAATTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGAGGGTTTTTTAAGCGAGAAGGAAAGACAAAAGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCCCTACGTCCTACGATGCCAAAGGGCTTCTACCATGAAACTCAAATATTATCTTGGGTTTTGAGCTACGATGGATTGCACTCCCCTGATTCTTTGGCTGTCACTGCAGCTGGTATAGCAGTAGCACTTTCAGAACTTCCTGTGTCAAAAACAGTTGCTGGAGTTCGTGTTGGTCTTGTTGGTGATAAATATATAGTAAATCCTACAACTCAGGAGATGGAACACTCTGAGTTGGACCTCTTGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGCTATAGCAATTTTCTTCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCTATCTGCAACGAGGTAGAAGCTCTGGTTAAGAAGTGTGGGAAGCCAAAGATGTTGGATGCCATCACGTTGCCTCCTCCTGAACTTTATAAACATGTTGAAGAAATTGCTGGTGATGAGTTAGTAAAAGTTCTTCAAATTAGAAACAAAATACCCAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTGAAGATACTCACAGAAAATGGGTTTGTCTCAAATGACTCAACACTGAGGAGTAATTTTGAGACCATTGCAGAGATTCTTGAGGAAGAGGATGAAGATGAGGAAATAATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACTCCACGCAAACCAGCCCTTTTGTTTTCTGAGGTAGATGTGAAGTTGGTATTTAAGGAAGTTACATCAAAATTTTTGAGGAAGCGCATAGTAGAGGGGGGGAAAAGGAGCGATGGTCGAACACCTGATGAAATACGACCAATCAACTCTAGATGTGGTCTATTACCCAGAGCACATGGAAGTGCTCTTTTCACGAGAGGCGAGACACAGTCACTAGCAGTTGTTACACTTGGAGATAAACAAATGGCGCAAAGAATAGATACTCTTGATGGTGTTGCTGATTTCAAGAGGTTTTATCTGCAGTATTCATTTCCACCTTCATGTGTTGGGGAAGCTGGCCGGATTGGTGCCCCAAGTAGAAGAGAAATTGGTCATGGTATGCTTGCTGAGAGATCCCTTGAACCAATTTTGCCTTCTGAAGTTGATTTCCCTTACACTATACGAGTTGAGAGTACTATCACAGAAAGCAATGGCTCTTCAAGTATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGTTCAATTGCTGGAATTGCAATGGGTATGGTACTGGACACCAAGGAATTTGGTGGAGATGGAACTCCACTTATTCTGTCTGACATAATTGGCTCTGAAGATGCATCTGGAGATATGGATTTCAAGGTTGCTGGAAATGAGGATGGCATAACTGCATTTCAAATGGACATTAAGGTGGGTGGAATTACTTTGCCCATCATGAGAAAGGCACTCCTTCAAGCAAGAGATGGCAGGAAGCATATACTTGGAGCAATGATGAACTGCTCACCTCCTCCCGCCAAAAAGCTTTCCAAGCATGCTCCTCTGATTCACGTTATGAAGGTCAAACCAGATAGAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATCATTGAAGAATCTGGAGTAGAGGCTATCGATACAGAAGATAATGGCACTGTGAAAATATTTGCAAAAGATCTATCTAGTTTAGAGAAGTCTAAAGCTATTATTAATAGTTTGACAATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGCCCCTTATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGTCATATCAGTGAACTGAGTTCAGGTTGGTTACCCAAGGCAGAAGATGTTTTCAAAGTGGGAGATCGTATTGATGTAAAGCTTATAGAGAAAAATGATAAGGGCCAGCTGCGCCTTAGTCACCGAGCAATGCTTCCTGATACAGATCCTGACAACTCAAATGTTAAACAGCCTACTGGCAAACTCACTGAAGATGCAGAAGAAACTTCATCAAAATCACCTGATAAGGATTCATTGAAAAAGGTTTCTAGCACTCCCAAAGTTACAGCCTCTTCTAAAAGGAGTTCAGAGGATGATTCTGTACTTCCATCTAAAAAGTTTGTCAGGAGATTGGTCAGCTCTTCTCAGGACAACCCTGATGAAGACAAAACTAATAAGAGTAGCAACAAAGAAGCTGGTAGTGTCTCTGGCAAAGATGAAAATAGTTTGGTTAGTGGAGAGGCATAA 2787 0.432 MLACPSSSLHGLAALQRHSQPSHFLLSKPLLFPPSSRFAASRKCNFRSLLSTARRRSRVRASAEVTDSVVGDGGVLEPYSVKIPVGDRHILVETGHIGRQANGSVTVTDGETIVYTTVCLDDVPTEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSELPVSKTVAGVRVGLVGDKYIVNPTTQEMEHSELDLLLAGTDSAILMIEGYSNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMLDAITLPPPELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEEKVLKILTENGFVSNDSTLRSNFETIAEILEEEDEDEEIIVDGEVDEGDVHIKPTPRKPALLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPDEIRPINSRCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRIDTLDGVADFKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLEPILPSEVDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTKEFGGDGTPLILSDIIGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMRKALLQARDGRKHILGAMMNCSPPPAKKLSKHAPLIHVMKVKPDRINLIIGSGGKKVKSIIEESGVEAIDTEDNGTVKIFAKDLSSLEKSKAIINSLTMVPTIGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEKNDKGQLRLSHRAMLPDTDPDNSNVKQPTGKLTEDAEETSSKSPDKDSLKKVSSTPKVTASSKRSSEDDSVLPSKKFVRRLVSSSQDNPDEDKTNKSSNKEAGSVSGKDENSLVSGEA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00605 928 Pfam KH domain 687 744 IPR004088 GO:0003723
Cca07g00605 928 Pfam 3' exoribonuclease family, domain 1 446 580 IPR001247 -
Cca07g00605 928 Pfam 3' exoribonuclease family, domain 1 88 218 IPR001247 -
Cca07g00605 928 Gene3D - 66 303 IPR027408 -
Cca07g00605 928 SUPERFAMILY Ribosomal protein S5 domain 2-like 79 218 IPR020568 -
Cca07g00605 928 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 61 895 - -
Cca07g00605 928 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 61 895 IPR012162 GO:0003723|GO:0004654|GO:0006402
Cca07g00605 928 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 678 747 IPR036612 GO:0003723
Cca07g00605 928 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 77 825 IPR012162 GO:0003723|GO:0004654|GO:0006402
Cca07g00605 928 Gene3D - 399 679 IPR027408 -
Cca07g00605 928 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 313 443 IPR036456 GO:0003723|GO:0006396
Cca07g00605 928 SMART S1_6 751 822 IPR022967 -
Cca07g00605 928 SUPERFAMILY Ribosomal protein S5 domain 2-like 420 592 IPR020568 -
Cca07g00605 928 Gene3D K Homology domain, type 1 680 752 IPR036612 GO:0003723
Cca07g00605 928 CDD PNPase_KH 683 744 - -
Cca07g00605 928 CDD S1_PNPase 753 821 - -
Cca07g00605 928 ProSiteProfiles Type-1 KH domain profile. 683 743 - -
Cca07g00605 928 SUPERFAMILY Ribonuclease PH domain 2-like 574 678 IPR036345 -
Cca07g00605 928 MobiDBLite consensus disorder prediction 909 928 - -
Cca07g00605 928 CDD RNase_PH_PNPase_1 79 305 - -
Cca07g00605 928 SMART kh_6 682 747 IPR004087 GO:0003676
Cca07g00605 928 Pfam 3' exoribonuclease family, domain 2 223 284 IPR015847 -
Cca07g00605 928 ProSiteProfiles S1 domain profile. 753 822 IPR003029 GO:0003676
Cca07g00605 928 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 413 823 IPR012162 GO:0003723|GO:0004654|GO:0006402
Cca07g00605 928 SUPERFAMILY Ribonuclease PH domain 2-like 221 305 IPR036345 -
Cca07g00605 928 CDD RNase_PH_PNPase_2 446 674 - -
Cca07g00605 928 SUPERFAMILY Nucleic acid-binding proteins 746 826 IPR012340 -
Cca07g00605 928 Gene3D - 753 824 IPR012340 -
Cca07g00605 928 Pfam S1 RNA binding domain 760 822 IPR003029 GO:0003676
Cca07g00605 928 MobiDBLite consensus disorder prediction 841 862 - -
Cca07g00605 928 MobiDBLite consensus disorder prediction 821 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00605 Cca-Chr7 8690782 8722319 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00605 K00962 - gmx:100785430 1442.94