Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00593 ATGGGGCTCAAAATCTTCATGGTTTCCTTCATGGTAACCTCAATCTTGTTCTTTCTTCTCTTTATTCCCACAAGATTGACCATACAATTCTCCAGCCTGAGGAATGTGAGCTACTTGAGTGTTCCCCAAAGCATCAAGGCTTATCCAGTTACTTTTGCCTACTTGATCTCTGCATCCAAAGGAGATGTTGGGAGGCTCAAAAGGTTGCTAAAGGTGCTGTATCATCCAGGGAACTACTATCTGATTCATGTGGATTATGGGGCTCCAGAGGCTGAACATAGGGAAGTGGCAGAATTTGTGGCTAGTGATCCTGTTTTTGGCCAAGTGGGGAATGTTTGGGTTGTGGGGAAGCCTAATTTGGTCACATATAGAGGACCAACCATGCTGGCTACCACTCTCCATGCCATGGCAATGCTTCTCAGGACCTGCCAATGGGATTGGTTTATTAATCTTAGTGCATCTGATTATCCCTTAGTTACACAAGATGATATGATCCAAGCCTTTTCTGAGTTGCCAAGGAGTATCAATTTCATACAACATAGCAGCCAATTGGGTTGGAAATTGAATAAGAGAGGGAAGCCAATAATCATAGATCCAGGACTTTACAGCCTAAATAAATCAGAAATTTGGTGGGTCATTAAGCAGAGGAGTTTGCCAACATCTTTTAAGCTATACACAGGTTCTGCTTGGACAATACTATCAAGATCTTTTGCCGAGTATTGCATAATGGGGTGGGAAAATTTGCCAAGGACCCTCCTCCTCTACTACACCAACTTTGTGTCATCCCCAGAAGGATATTTCCAAACGGTTATATGCAACTCTGAAGACTACAAGAACACCACAGTTAACCATGATCTCCACTACATCACTTGGGACAATCCTCCAAAACAACACCCTAGGTCTCTAGGACTCAAGGACTACAGGAGAATGGTTCTTAGTAGCCGTCCATTTGCCAGAAAATTCAAGAGAAATGATCCAGTTCTTGATAAAATTGATAGAGAGCTTCTGAAGAGGTATCATGGCCAATTTTCTTTTGGGGGGTGGTGCTCTCAAGGTGGAAGGCACAGAACATGCTCAGGTTTGAGAACTGAGAATTATGGAGTTCTCAACCCTGGTCCATCCTCAAGAAGGCTCAAAAATCTTCTAACAAAACTTGTCTCTGATAAATTTTTTCATAAACAACAGTGCAGAGCTTTTCACTCTCTTCACAATCCTCTCTCCGTCTTTCTTGAGTTCACTCTTCTCTCGGTGTTGCCTTTCACGAATTTCGTTTCGGTTGCGTTGGAATTGCAGAGATCCGCGCAACCGGAAACCACCACCGGAATAGTCCCCGCCACCGTCTGCCACCGCCAGATTTGTGTCAACCACAATGATGACGGTTACTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTACATTTGTTAAGAATGCAGCAGGGCAGAGTAAATTATCTGGAAATTATGTACGAACAGTTCAAAGTGAGTTCTCTGATTCACGTCAAAGGACTTTAGATAGAGCATATGATGAAATAAAATATTTAAGTTATGGCCTTGGAGTGAATGATGAAAGTATGACTGACCAAGCTTTGACCTTTTATAAAATAGCACTTGAGCGAAATTTCACCCGTGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTCCGGCACAACAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACCATGAATTTGTTGAAGCATGGGAGTAAGGCTGTCTCTGATACTGCGTTGACCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCACATGGTTTTAAGTGCTCTAAGCCGGATATTCTTAGAATCGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTAGAATTTGAGTGTACAAAGTCTTCTAGCTTGACAATTGAGGAGTTGGATACGATGGCAAAAGAGCATGAAAAAAATCCAATGGTAATGCCAGCAGATGAATCAGAAACTTTCTCTGATATAGATGATGAAGATGTTGATGTGTACCTTCATGATGAGGAGGGGAAGCATATCAAGAAGATACTATGGGAAACAGCGAACCAAGAGTATCTTGAGGAGCAGGCAGCTAAGGAAGCAGCTGCAGCAGCAAGTAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCAGAGGATTTACTAGCGGCAAGAGAGCTTGCTGCATCTGTTAATGAAGCCGTGGCAAAATCCAGAAAGGAAACAAGACAGAGACGCGCCCATGAGGCAAAAAATTTAGGGCCAGCTCAATCTGCTGCTGAGGCTTTTGGCCAAATGTCTAATAAAAAAAGGCACTTGCAGAGTCTCAAATCTAAAGTCAACTTTGATATCCTGGGTGAATTTCTATTTAATGAAATGGAAGATGGCGTTGATCCCAAGAAACAGAAGAAAGTGCGATTTGATCCGCCCCCAGATAATCAAGTTGAGGACAAAAATGAGGATGGGATGGGATCAGTGGATGATTTTGAAGATGAAGGTGATATGTATAAAAATGCCTCCTCTACTGAAAATATGTATGAGAAATACTTCTCTGAGGATAGTAGTTTCGGCTATAATGATGATGATTACTCAAAAGTAGCTTAG 2823 0.4187 MGLKIFMVSFMVTSILFFLLFIPTRLTIQFSSLRNVSYLSVPQSIKAYPVTFAYLISASKGDVGRLKRLLKVLYHPGNYYLIHVDYGAPEAEHREVAEFVASDPVFGQVGNVWVVGKPNLVTYRGPTMLATTLHAMAMLLRTCQWDWFINLSASDYPLVTQDDMIQAFSELPRSINFIQHSSQLGWKLNKRGKPIIIDPGLYSLNKSEIWWVIKQRSLPTSFKLYTGSAWTILSRSFAEYCIMGWENLPRTLLLYYTNFVSSPEGYFQTVICNSEDYKNTTVNHDLHYITWDNPPKQHPRSLGLKDYRRMVLSSRPFARKFKRNDPVLDKIDRELLKRYHGQFSFGGWCSQGGRHRTCSGLRTENYGVLNPGPSSRRLKNLLTKLVSDKFFHKQQCRAFHSLHNPLSVFLEFTLLSVLPFTNFVSVALELQRSAQPETTTGIVPATVCHRQICVNHNDDGYLCCGSCGRVLEDYFFAEEPTFVKNAAGQSKLSGNYVRTVQSEFSDSRQRTLDRAYDEIKYLSYGLGVNDESMTDQALTFYKIALERNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTMNLLKHGSKAVSDTALTIVASMKRDWMQTGRKPSGLCGAALYISALAHGFKCSKPDILRIVHVCEATLTKRLVEFECTKSSSLTIEELDTMAKEHEKNPMVMPADESETFSDIDDEDVDVYLHDEEGKHIKKILWETANQEYLEEQAAKEAAAAASKKAFEANFENCSEDLLAARELAASVNEAVAKSRKETRQRRAHEAKNLGPAQSAAEAFGQMSNKKRHLQSLKSKVNFDILGEFLFNEMEDGVDPKKQKKVRFDPPPDNQVEDKNEDGMGSVDDFEDEGDMYKNASSTENMYEKYFSEDSSFGYNDDDYSKVA 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00593 940 Pfam Brf1-like TBP-binding domain 734 860 IPR011665 -
Cca07g00593 940 Pfam Transcription factor TFIIB repeat 509 597 IPR013150 GO:0017025
Cca07g00593 940 Pfam Transcription factor TFIIB repeat 611 699 IPR013150 GO:0017025
Cca07g00593 940 Gene3D - 504 605 - -
Cca07g00593 940 SUPERFAMILY Cyclin-like 613 698 IPR036915 -
Cca07g00593 940 MobiDBLite consensus disorder prediction 811 831 - -
Cca07g00593 940 CDD CYCLIN 614 689 IPR013763 -
Cca07g00593 940 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 1 396 - -
Cca07g00593 940 SMART cyclin_7 517 599 IPR013763 -
Cca07g00593 940 SMART cyclin_7 617 700 IPR013763 -
Cca07g00593 940 Gene3D - 614 704 - -
Cca07g00593 940 CDD CYCLIN 515 584 IPR013763 -
Cca07g00593 940 PRINTS Transcription initiation factor IIB signature 654 670 IPR000812 GO:0006352|GO:0070897
Cca07g00593 940 PRINTS Transcription initiation factor IIB signature 560 579 IPR000812 GO:0006352|GO:0070897
Cca07g00593 940 PRINTS Transcription initiation factor IIB signature 457 477 IPR000812 GO:0006352|GO:0070897
Cca07g00593 940 MobiDBLite consensus disorder prediction 872 909 - -
Cca07g00593 940 Pfam Core-2/I-Branching enzyme 52 310 IPR003406 GO:0016020|GO:0016757
Cca07g00593 940 PANTHER GLYCOSYLTRANSFERASE 1 396 IPR044610 GO:0015020
Cca07g00593 940 MobiDBLite consensus disorder prediction 872 895 - -
Cca07g00593 940 Gene3D Single helix bin 727 776 - -
Cca07g00593 940 SUPERFAMILY Cyclin-like 515 603 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00593 Cca-Chr7 8547554 8578899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00593 40 397 Glycosyltransferase AT4G27480 57.103 1.40e-148 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00593 - - gmx:100812712 756.518