Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00592 ATGATTAAGGAGTTGAATACTATGGGAAAAGAGCATGGAAAAAATCCAATTGTAATGTCAGAAGGTGAATCAGAAACTTTCTCtgatattgatgatgatgatgttgatgtgtaccttcatgatgaagaAGGGAAGAATATCAAGAAGATACTATGGGAAAAAGTGAACCGAGTGTATCTTTTGGAGCAGGCAGCCAAGGAAGCAACTGGCACGAAAGCTGTTGGGGAAAATTTAGGAAACTGTTCGGAGGTTTTACTTGCGGCTAGAGATCTTGACAAAGCTGTGGCGAAATCCAGAAAGGAAAGGAAACAGAGAGAAGGCCACGAGTCAAAAAATTTATGGCCAGCTCAATCTGCTACAGAGGCTGTTGGCCAGAGTCGCAAATCTAGAGTCAATTTTGATCGCCTCAATGAATTATTGAATTAA 426 0.3685 MIKELNTMGKEHGKNPIVMSEGESETFSDIDDDDVDVYLHDEEGKNIKKILWEKVNRVYLLEQAAKEATGTKAVGENLGNCSEVLLAARDLDKAVAKSRKERKQREGHESKNLWPAQSATEAVGQSRKSRVNFDRLNELLN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00592 141 Gene3D Single helix bin 21 69 - -
Cca07g00592 141 MobiDBLite consensus disorder prediction 96 128 - -
Cca07g00592 141 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 11 138 IPR000812 GO:0006352|GO:0070897
Cca07g00592 141 MobiDBLite consensus disorder prediction 96 110 - -
Cca07g00592 141 Pfam Brf1-like TBP-binding domain 28 140 IPR011665 -
Cca07g00592 141 Coils Coil 133 141 - -
Cca07g00592 141 MobiDBLite consensus disorder prediction 1 28 - -
Cca07g00592 141 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 11 138 IPR029529 GO:0000126|GO:0000995|GO:0006383
Cca07g00592 141 MobiDBLite consensus disorder prediction 111 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00592 Cca-Chr7 8540143 8545374 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00592 K15196 - ccaj:109802233 272.322