Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00575 ATGGGTGGCGTTGCCCCAAGGTTCCTCTTCCTCCTCGGCGCTCCCATCCCTCTTCTCCGCCGCCACCACCACCACCGCCGCAACCTCTTCCTCTTCCCTTCCCACTCCCATTCCCTGCGCCTCCCTTCCTTCTCCTTCTCATCCTCTCCCTCTCTCCCACTCAAACTCAAAGCCTCTCACTCCTCCGCCTGGCCCGAGTGGTCCTCATTCCTCTCCCACATCTCCTCCGCCGGCTACCTCCCCTCCCTCCCCGACCACGCCTTCGTCGAAGCCGCCGCCAACCTCCCCCACTCCTTCCTCCACGACGCCGCCGCCTGCTTGGCCTTCGCCCGCGACCGACCTAACCTTCTCAGGTTGCTTTCTGTGAGAGACATTGCGGCTGTCGTTGAGCATGGCTCCCCCTTTCTCTTCCGCGACGCTGAGGATTCCGTCAGGAAGATGAGGTCCTTTCTCTCCGACGCTCATGCCAATGACGCTGATAGAGCAAATACAGTTGATCTAATGAAGTTTCTGCTGAGTTATGCAAGTAACCCATTTGTCTCTTCAGAAGGGAACAGTCTCAATAAAAGAGAACTTGTTGAATCATCTGTCAGAAATCTATTCGGTGAACTTTTCAAGCTGAGTTATAGTGCACCTGGTCCTAACTCTTTTGCTTCAGTACAAAATCAAATGGCTGGCAGATTTGGAGAGACAAAGCCTCCTGGACAAAAAATTGAAATGAAGAGGGGTGATTGGGTTTGCCCAAGGTGTAATTTCATGAATTTTGCAAGAAACGTCAAATGTCTTGAGTGTGAGGAAGCAAGGCCGAAAAGACAACTGGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTACAACTATGGGAGGAATATGACTTGCTTAAGGTGTGATTGCAAGCGACCTGGACAAATATCTTTGGGTGCCACTGATACCATGTCAAATATGGGGTACGAAAATGGAAACAATCCTAATACTTCAGATGTCAATGTGAGGTTAGCTGCTAATGAAGAAAAGGCACAGCGTTGGTTTAGCAAGGTTTCTCAACTAGACAGCGGTGCTGATATTAACAGTGTGATAGCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGGGTAAATAGATTTGTTGTAAGCACAAGGAAAACTCCATTGGAGAGGAGGTTGGCTAATGCTCAATACAAGAGAAACTTGTCCAATAATGACAATCCCGGGATTGAGGATTTTAAAGCTGGGGAACCAATCAAGTCCCATGACACACTGGATGACATTCTAGGTCGTTCAGCTGGCTTTCCTCAATCTGACAATAAGAACACTTTTGCTGAACAAAATACCAGTGGAGACAGCCTGCCTTCATTTGCTAGTAACAACACTAGTACTGTTCCTCCCATTCCATTGTCTGCAGACGCACTTGCGCAAAAGTCCGAGAACTTTCTAGCAGAGGAAAGGAAAAAGGTGGTATTCGACACTGATGTTAGATATGCTAGTTCTGGAGACAGTTCACAGCTTTATAATAATTCTACAAGCCAAAGCATCATAGAGGATAAGGAGAAAGAGCAAGCAGAAAAATCTGAGAGGTGGTTTAGAAAGGTTTCTGAGCTGAATGATTTTCCAGATATAACAAGTGCAATATCTGATGAGGAATTCCCTGAAATAATGCCTATGCGTAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAGGATCGTTCTTTGACAACACCAGCATATAAGAGACGCGCGGCCATGGAGCAATCCGGCAAAACCAACTTTGTCCCCTTTGTTCCCTTCCCCCCAGATTACTTTGCCAAAAAGGACAAGCAGCAGACAGAAGGAGCTGCAGATTCAGCGGATACTTCCAATGATGATACATCTTCCATATCTGAAATGGCAGAGAAGCCTCCAGAGATCTCAGATGGTGCTAGAGCTAGACCTGAACAAGGTCCAAAATCTTCTGAGCAGAGCTCAAATAACAATGATGTTGGTGCTATGTATAGGGCAACAACTGGTGGAAATTCAAGGCAGAGTTTCAGTCAAGATCATGTTCCGAATTTGACAGGGAGTTCAACCCCAAGTCCAGCTTCTGAGAACCAGAGTGTTAGAGCAGAATGGTCAGGACAGAGTTTGGAGGGGTCAGCTGTGAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCGGAGAGGTGGTTCCGTCGCGTGGCGCAGATTAAGGATATTTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACGCCACTGGAAAGGAGATTGTCATCTAAGCAGTACCGAAGAAATCTTCCAACTGTGAGCTCAGATCCTATTAAAAACGAAAATGAAGGCAGCTGA 2415 0.4679 MGGVAPRFLFLLGAPIPLLRRHHHHRRNLFLFPSHSHSLRLPSFSFSSSPSLPLKLKASHSSAWPEWSSFLSHISSAGYLPSLPDHAFVEAAANLPHSFLHDAAACLAFARDRPNLLRLLSVRDIAAVVEHGSPFLFRDAEDSVRKMRSFLSDAHANDADRANTVDLMKFLLSYASNPFVSSEGNSLNKRELVESSVRNLFGELFKLSYSAPGPNSFASVQNQMAGRFGETKPPGQKIEMKRGDWVCPRCNFMNFARNVKCLECEEARPKRQLAGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGATDTMSNMGYENGNNPNTSDVNVRLAANEEKAQRWFSKVSQLDSGADINSVIADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKRNLSNNDNPGIEDFKAGEPIKSHDTLDDILGRSAGFPQSDNKNTFAEQNTSGDSLPSFASNNTSTVPPIPLSADALAQKSENFLAEERKKVVFDTDVRYASSGDSSQLYNNSTSQSIIEDKEKEQAEKSERWFRKVSELNDFPDITSAISDEEFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRRAAMEQSGKTNFVPFVPFPPDYFAKKDKQQTEGAADSADTSNDDTSSISEMAEKPPEISDGARARPEQGPKSSEQSSNNNDVGAMYRATTGGNSRQSFSQDHVPNLTGSSTPSPASENQSVRAEWSGQSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLSSKQYRRNLPTVSSDPIKNENEGS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00575 804 ProSitePatterns Zinc finger RanBP2-type signature. 278 297 IPR001876 -
Cca07g00575 804 MobiDBLite consensus disorder prediction 566 724 - -
Cca07g00575 804 MobiDBLite consensus disorder prediction 785 804 - -
Cca07g00575 804 MobiDBLite consensus disorder prediction 429 462 - -
Cca07g00575 804 Gene3D - 272 304 - -
Cca07g00575 804 Gene3D - 234 271 - -
Cca07g00575 804 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 803 - -
Cca07g00575 804 PANTHER ZINC FINGER PROTEIN 3 803 - -
Cca07g00575 804 SUPERFAMILY Ran binding protein zinc finger-like 235 270 IPR036443 -
Cca07g00575 804 SMART zf_4 243 267 IPR001876 -
Cca07g00575 804 SMART zf_4 276 300 IPR001876 -
Cca07g00575 804 ProSiteProfiles Zinc finger RanBP2 type profile. 241 270 IPR001876 -
Cca07g00575 804 MobiDBLite consensus disorder prediction 433 462 - -
Cca07g00575 804 ProSitePatterns Zinc finger RanBP2-type signature. 245 264 IPR001876 -
Cca07g00575 804 MobiDBLite consensus disorder prediction 615 630 - -
Cca07g00575 804 Pfam Zn-finger in Ran binding protein and others 242 269 IPR001876 -
Cca07g00575 804 Pfam Zn-finger in Ran binding protein and others 276 302 IPR001876 -
Cca07g00575 804 ProSiteProfiles Zinc finger RanBP2 type profile. 274 303 IPR001876 -
Cca07g00575 804 MobiDBLite consensus disorder prediction 773 804 - -
Cca07g00575 804 MobiDBLite consensus disorder prediction 650 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00575 Cca-Chr7 8277240 8281881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00575 64 307 EF-hand Containing Proteins AT1G55040 32.534 6.05e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00575 - - gmx:100792849 1273.07