Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00572 ATGGGAGAGAGAACTGCGTCTGGCTTTGCCATCAAGAAATCCTTGTGTTTTTTCTTCACATTGACCACGTTGTTGTTCATGTTGTCATGGGTGTTTGTTCTTCGTTCCACGCGCTCCGAGGCTACACTTGGTTCCACTACCAACTCAAATCTATTCACTTCCTTTAATGACTCAGATTCTGATCAAGTGCAACAACAAAAGAACGTGGAAGTTGAATCCTCCTTTGGCAATAGAGCAATACTCGTGGACAATGTTGAAGCACCAACAACACTTGTTGAGAAACAACAACATGTGCATGGAGAAGAAGGTGTGACATGCAAACCACGTCACCATGCCGTTTTGAGAGTTTTCATGTATGATTTGCCTCCTGAGTTCCATTTTGGACTATTGGATTGGAAGCCTGAGGGGGGTGTTAACAGTGTTTGGCCTGATATCAAAGCTAAAGCACCCCATTACCCTGGAGGGTTGAATTTGCAACATAGTATAGAGTATTGGCTTACTTTGGATCTTCTTGCTTCAGAAGCTGAAGcatcatcatcatcatcatcTAATGCTAACAGTGTGATGAGAGTTGGAAACTCTAGTGAAGCTGATGTGATATTTGTGCCATTCTTTTCTTCTCTTTGTTACAACCGGTTCTCCAAAACTGGCCCACGTGAAAAGAGGAGCAGGAACAAGGTGCTGCAAGAGAAGTTGGTGAAGTATGTGACATCGCAAGAGGAGTGGAAGAGGTCAGGGGGGAAGGACCATGTGATCTTGGCTCACCATCCAAATAGTATGTTGGATGCTAGAATGAAGTTATGGCCTGGTACTTTCATACTCTCGGATTTTGGGAGGTACCCTCCCAACATAGCCAATGTTGAGAAAGATGTGATTGCACCTTACAAACATGTAGTTGGATCCTATGATGATGATCAATCCAGCTTTGATAGCCGTCCAACGTTGTTGTACTTCCAAGGCGCAATATACAGAAAAGATGGAGGCCATGTTCGGCATGAGCTATACTACCTTCTAAAAAATGAAAAAGATGTACATTTTTCATTTGGAAGTGTTCAAAAGGGTGGAGTCAGAAAGGCCACAGAAGGCATGCGTTCTTCCAAGTTCTGCCTCAACATAGCTGGTGACACCCCATCATCAAATCGCTTGTTTGATGCTATTGCCAGCCACTGTGTACCCGTCATCATCAGTGATGAAATTGAGCTTCCATATGAGGATGTCCTTGACTACTCTCAGTTTTGCATATTTGTGCGTACGAGGGATGCTCTCAAGAAGAGGTTCCTGATAAACTTCATTAGGAGCATTGGTAAGGAAGAGTGGACCAGAATGTGGAACAGGTTGAAAGAGGTTGAGAGTTTCTTTGAGTTTCAGTTCCCATCTCAAGAGGGTGATGCTGTCCACATGATTTGGCAGGCTGTTGCACGCAAGGTTCCTTTCATGAAGCTGAAAACTAACAGGCTCGCCGCCGCCACCAGAGAGTCTACTCCGTTACTCTACTCCGGCAGGCAAGGGTTCGATACCGTCAACATTGCCGAAGATGTTACCCAGTTGATTGGAAATACGCCAATGGTGTACCTCAACAAAGTTACTGAAGGTTGTGTTGCTAACGTTGCTGCCAAACTTGAGTCTATGCAACCTTGCCGAAGCGTCAAGGACAGAATTGGGTATAGTATGTTATCTGATGCTGAAGAGATTGGAGCAATTTCTCCAGGGAAGACCATTTTGGTTGAACCAACGACTGGAAACACAGGACTTGGCATTGCTTTTGTTGCAGCAACGAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCCGTTAATGTTGAGAGGAGAATCCTTTTACGTGCTTTTGGTGCAGAAGTTGTTTTGACTGATGCTGAGAAGGGGCTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCGCACCACACCCAATGCTTACATGTTTAGACAGTTTGATAACATGACTAACACAAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCATGGGCAATGTTGATGTATTGGTTGCTGGGATTGGAACTGGTGGCACTGTTACCGGCACTGGGCGTTATCTGAAAATGATGAATAAAAATATAAAGGTGGTTGGAGTGGAACCTGCAGACAGAAGTGTGGTTTCGGGTGACAGTCCTGGTTTCATGCCAAGCATTTTGGATATCAATCTGCTTGATGAGGTTATCAAGGTTACAAATGTTGAGGCCGTCGAAATGGCAAGGAGATTAGCATTGGAAGAAGGTTTGTTGGTTGGGATTTCTTCAGGAGCTGCAGCAGCAGCTGCCATAAGTTTAGCAAGACGGCCTGAGAATTCTGGAAAACTTATTGTGGTTATTTTTCCGAGTTTTGGTGAGAGATATATTTCTACTGCTCTCTTCCATTCTATCTATGAAGAGGTTCAGAAAATGTAA 2439 0.4383 MGERTASGFAIKKSLCFFFTLTTLLFMLSWVFVLRSTRSEATLGSTTNSNLFTSFNDSDSDQVQQQKNVEVESSFGNRAILVDNVEAPTTLVEKQQHVHGEEGVTCKPRHHAVLRVFMYDLPPEFHFGLLDWKPEGGVNSVWPDIKAKAPHYPGGLNLQHSIEYWLTLDLLASEAEASSSSSSNANSVMRVGNSSEADVIFVPFFSSLCYNRFSKTGPREKRSRNKVLQEKLVKYVTSQEEWKRSGGKDHVILAHHPNSMLDARMKLWPGTFILSDFGRYPPNIANVEKDVIAPYKHVVGSYDDDQSSFDSRPTLLYFQGAIYRKDGGHVRHELYYLLKNEKDVHFSFGSVQKGGVRKATEGMRSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDEIELPYEDVLDYSQFCIFVRTRDALKKRFLINFIRSIGKEEWTRMWNRLKEVESFFEFQFPSQEGDAVHMIWQAVARKVPFMKLKTNRLAAATRESTPLLYSGRQGFDTVNIAEDVTQLIGNTPMVYLNKVTEGCVANVAAKLESMQPCRSVKDRIGYSMLSDAEEIGAISPGKTILVEPTTGNTGLGIAFVAATKGYKLIVTMPASVNVERRILLRAFGAEVVLTDAEKGLKGAVDKAEEIVRTTPNAYMFRQFDNMTNTKIHFETTGPEIWEDTMGNVDVLVAGIGTGGTVTGTGRYLKMMNKNIKVVGVEPADRSVVSGDSPGFMPSILDINLLDEVIKVTNVEAVEMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIVVIFPSFGERYISTALFHSIYEEVQKM 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00572 812 TIGRFAM cysKM: cysteine synthase 514 802 IPR005856 GO:0004124|GO:0006535
Cca07g00572 812 TIGRFAM cysK: cysteine synthase A 514 802 IPR005859 GO:0004124|GO:0006535
Cca07g00572 812 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 509 806 IPR036052 -
Cca07g00572 812 Pfam Pyridoxal-phosphate dependent enzyme 513 790 IPR001926 -
Cca07g00572 812 Pfam Exostosin family 113 428 IPR040911 -
Cca07g00572 812 Gene3D - 515 798 IPR036052 -
Cca07g00572 812 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 6 484 IPR004263 GO:0006486|GO:0016757
Cca07g00572 812 Gene3D - 551 653 IPR036052 -
Cca07g00572 812 PANTHER EXOSTOSIN FAMILY PROTEIN 6 484 - -
Cca07g00572 812 CDD CBS_like 518 798 - -
Cca07g00572 812 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 539 557 IPR001216 GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00572 Cca-Chr7 8234156 8242358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00572 505 812 Miscellaneous Gene Families AT3G03630 79.545 1.14e-162 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00572 - - gmx:100819100 1342.02