Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00568 ATGGAATCGAGCGTTCTGGAATGCGTGGGAGTGGAAATAATCGGCGTCATGAGTCCGGTCTCGATCTGCATGTTCCTGGTGGTTCTCCTCGTCTACTCCCTCTCCTCGCCGGACGCCGCCGCCGCCACCATGCGCACCGTCGCCAACTTCGTCTACGCGGAGAATCCCTCCGACACGGCGGCGCAGAAGCTGGAGGGCGCGCTCCTGAACGCGCTGGTGTTCGTGATCCTCATCGCGGTGGTGACCTTCCTCCTCGTCCTCCTCTACTACTACAACTGCACCTCCTTCCTCCGCCACTACACGCGCTTCTCCGCCTTCTTCGTCCTCGCCTCCATGGGCGGATCCATCCTCCTATCCCTCCTCCAGCGCTTCTCCATCCCCCTCGACGCCCTCACCTCGCTCCTCCTCCTCCTCAACTTCACCGTCGTCGGCGTCCTCTCCGTCTTCTCCGCCGCCGTCCCCATCCTCCTCCGCCAGTTCTACATGGTCTGCCTCGGGATCATCGTCGCCGCCTGGTTCACCAAGCTGCCGGAGTGGACCACGTGGGCGCTCCTCGTCGCGCTCGCGCTCTACGATTTGGTCGCCGTTCTCGCTCCCGGCGGACCGTTGAAGCTGCTCGTCGATTTGGCCTCCAGTCGCGACGAGGAGCTGCCGGCGTTGGTGTACGAGGCGCGCCCGACGGTGTCCGCCCGGAACCCTGCCGCGTTAGGGTTTCTCGTCGCCGGGGTTTCGGATTCTGAAAGCTCTAGAATTGAGCTTCAGGTAGTTTCTAGGGATAATGTAATTAGGAATAGTAGTAGCGACAatgatgacgatgacgatggtggtgatgaggagaatggtggtagaggagatgaAGGGGAACGGTCTCCGTTGGTTGGTGGAATGAGTGGGGTGGGGGAGGGTGAGGAAGAAGATGACGGGGTGAGGAGGGAGGTGTTGGGGGAAAGGGGGATTAAGCTTGGTCTTGGGGATTTTGTATTCTACAGTGTTCTTGTGGGGAGAGCGGCAATGTATGATTTGATGACTGTGTATGCTTGTTACCTTGCCATTATTTCTGGCTTGGGTTGCACGCTCATTTTGTTGTCTGTGTGCCGCAAGGCCTTGCCGGCGCTTCCCATTTCGATCACCTTGGGGGTTCTGTTCTACTTTTTGACGAGGCTGCTCATGGAGCCCTTCATTGTTGGGACTGCCACCAATTTGATGATGTTTTGA 1215 0.5638 MESSVLECVGVEIIGVMSPVSICMFLVVLLVYSLSSPDAAAATMRTVANFVYAENPSDTAAQKLEGALLNALVFVILIAVVTFLLVLLYYYNCTSFLRHYTRFSAFFVLASMGGSILLSLLQRFSIPLDALTSLLLLLNFTVVGVLSVFSAAVPILLRQFYMVCLGIIVAAWFTKLPEWTTWALLVALALYDLVAVLAPGGPLKLLVDLASSRDEELPALVYEARPTVSARNPAALGFLVAGVSDSESSRIELQVVSRDNVIRNSSSDNDDDDDGGDEENGGRGDEGERSPLVGGMSGVGEGEEEDDGVRREVLGERGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRKALPALPISITLGVLFYFLTRLLMEPFIVGTATNLMMF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00568 404 Gene3D Presenilin 300 395 IPR042524 -
Cca07g00568 404 PANTHER PRESENILIN 285 404 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca07g00568 404 PANTHER PRESENILIN 1 274 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca07g00568 404 SMART psh_8 65 390 IPR006639 GO:0004190|GO:0016021
Cca07g00568 404 MobiDBLite consensus disorder prediction 262 309 - -
Cca07g00568 404 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca07g00568 404 PRINTS Presenilin family signature 175 182 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca07g00568 404 PRINTS Presenilin family signature 192 209 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca07g00568 404 Pfam Presenilin 280 394 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca07g00568 404 Pfam Presenilin 10 260 IPR001108 GO:0004190|GO:0016021|GO:0016485
Cca07g00568 404 PANTHER PRESENILIN 285 404 - -
Cca07g00568 404 PANTHER PRESENILIN 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00568 Cca-Chr7 8167568 8169724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00568 1 404 Miscellaneous Gene Families AT1G08700 60.917 5.66e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00568 K04505 - gmx:100799010 539.265