Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00564 ATGGCCACTGTCCTCAGAACCCCCACTTTCCGgccaccgcctccgccgcgcgccgccAAGTCGCCGAAACCCTCGCGCGTCGCCGTTGCGTCTTTCAGCCAAACCACTGCCTCCAGGAGAGCACCCTCGCCCCTCTCCTCCCTGCGGTTCCCTGTCGTCCCCTCTCCGCGGTTCGCCAAGTTCGTTCCCTTCGCCTTCGACGGCGACACCGATTCCCCGCAAGTTCAGGAACCGGAGGTTCAGGTTCTGGACCCTTCAGATGGTGCTGTTGATGTAAAGGACAGTGCGAGTGATAATGAGGTTAGTGATGCTGGTGAAACACCTGTTTCACCTTTCTTAGCGTTACTTCAATTGTACAAAGAAGCATTAGCTAATAATGATGAAGTCAAAATTGCTGAGTTGGAATCGTCATTAAAATCTATTGAAGATGATAAAATAGAACTTGAAGGGAAAATAGCTTCTTTATCTGAGGAGTTAACTATAGAAAAGGATCGGATTCTAAGAATTAGTGCCGACTTTGACAATTTTCGGAAGAGGACGGAGAGAGATCGCCTGTCACTAGTCACAAATACTCAGGGTGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCAAAGACCCAGATTAAGGTGGAGACAGAGGCAGAGGAGAAAATAAACAACAGCTATCAAAGCATATATAAACAGTTCATTGAAATTCTAACCTCACTTGGAGTTGAACCAGTGGAGACAGTTGGAACACCCTTCGATCCAATGCTACATGAAGCAATTATGCGTGAAGATTCTGATGAATATGAGGATGGCATCATAATTCAAGAATTCAGAAAGGGTTTTAAACTAGGTGACCGTCTCTTGCGTCCATCAATGGTGAAGGTATCAGCTGGTCCTGGACCAGCAAAGCCTGAACAAGAAGCACCGCAAGAAGAACAAGCCAAAACTGAAAATTCTGAGGACAGTGTAGAGAACGAGGGTGTCACTGAAACAGAGTCTGCTTGA 1008 0.4474 MATVLRTPTFRPPPPPRAAKSPKPSRVAVASFSQTTASRRAPSPLSSLRFPVVPSPRFAKFVPFAFDGDTDSPQVQEPEVQVLDPSDGAVDVKDSASDNEVSDAGETPVSPFLALLQLYKEALANNDEVKIAELESSLKSIEDDKIELEGKIASLSEELTIEKDRILRISADFDNFRKRTERDRLSLVTNTQGEVVESLLPVLDNFERAKTQIKVETEAEEKINNSYQSIYKQFIEILTSLGVEPVETVGTPFDPMLHEAIMREDSDEYEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEEQAKTENSEDSVENEGVTETESA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00564 335 Coils Coil 124 165 - -
Cca07g00564 335 Gene3D - 125 240 IPR013805 -
Cca07g00564 335 MobiDBLite consensus disorder prediction 1 47 - -
Cca07g00564 335 PANTHER GRPE PROTEIN 17 317 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 Gene3D Head domain of nucleotide exchange factor GrpE 242 297 IPR009012 GO:0006457
Cca07g00564 335 MobiDBLite consensus disorder prediction 27 43 - -
Cca07g00564 335 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 147 242 IPR013805 -
Cca07g00564 335 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 243 299 IPR009012 GO:0006457
Cca07g00564 335 MobiDBLite consensus disorder prediction 293 335 - -
Cca07g00564 335 CDD GrpE 163 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 ProSitePatterns grpE protein signature. 253 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 Pfam GrpE 139 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 MobiDBLite consensus disorder prediction 309 323 - -
Cca07g00564 335 PRINTS GrpE protein signature 167 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 PRINTS GrpE protein signature 195 210 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 PRINTS GrpE protein signature 250 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 PRINTS GrpE protein signature 277 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 MobiDBLite consensus disorder prediction 85 106 - -
Cca07g00564 335 Hamap Protein GrpE [grpE]. 97 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca07g00564 335 PANTHER GRPE PROTEIN HOMOLOG 17 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00564 Cca-Chr7 8102692 8107324 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00564 K03687 - gmx:100820521 518.85