Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00520 ATGAGTCTCGTGTGCAACCTCAGACACAGGATCCTGCCACCATCTCCCTCGCCCTTGGTCCTCTTCATCCAACGGCGATGGAAGAAACCCACCGTCTCCGCCCAAACCCGTTTGGAAGACAGAGTAAGAGACCCCCACCTCGACAAGTTCACGACCCACTTCAAAAAACTCGACCTTGTCCTCAGAATCCACCACCTCATGTCCACCCGCAAGCGCGGTCCCTTCGTCTCCCTCACCCTCATGTCCCGTTGGAGAAACATCCTCGGACTCCACGTCCCCGTCGCCTCCTTCCTCCACAAACACCCCCACGTGTTCCACGTTTTTACCCACCCTCTCAGGAGGAACACGTGTTGCAGGATAACAAAAGGGATGAAAGACTTGATCTTGCTTGAAGGGGTTGTGCTGAAGCAGCAACAGATGGAGGCTGTCAAGAGGGTGAAGAAGTTGTTAATGATGTCTGTGAGTGGCACTCTTCGTTTGCATGCGTTGAGGTTGATCAGAAGAGAATTGGGTCTCCCTGGGGATTTCAGAGACTCCATTCTGGCCAAGTATAGTGGGGATTTCAGGTTGGTTAATTTGGAGGTTGTGGAATTGGTTCATTGGGATGCTGAATTGGGGGTGGCTCAGGTTGAGAAATGGAGGGAGAAGGAGTATGTGGAAAAGTGGTTGAGTGAGTTTGAAACTAAGTTTGCATTTCCCATTAGTTTCCCAACTGGGTTTAAGTTTGAGAGAGGGTTTAGGGAGAGGTTGAAGAATTGGCAGAGGCTTCCATACACTAAGCCTTATGAGAAGAAGGAGGTGGTTCGGGTGAAGACGTGTGGAGGGATCGAGCGATACGAGAAGAGGGCTGTGGCTGTTCTTCATGAGCTGTTGAGCTTGACTGTGGAGAAAATGGTTGAGGTTGATCAGTTGGCTCATTTTCGTAGGGACTTTGGTATTGAAGTTAATGTGCGGGAATTGTTGTTAAGGCACGCTGGTATATTTTACCTGTCTACTAAAGGGAAGACTCTAACTGTTTTTCTCAGGGAAGCTTATAGGAAAGGGGGTTTGATTGAGCCGAATCCGGTGTATGAGGTGCGTAGGAATATGTTGGATCTTGTATTGTTAGGATGTAGGAAAACCAGACAGTTGGTAGCTTGTGATGAATCTAAGGAAGAGAGTAGTTCTAGTGTAGTTTATGAAGTGAATGAGGAAGGTGAAAGACAAGGAGATTGGGTGATTCCTTTCTTGGAGAATTGTGAGGAGAATAGATCCCCTTGA 1260 0.4817 MSLVCNLRHRILPPSPSPLVLFIQRRWKKPTVSAQTRLEDRVRDPHLDKFTTHFKKLDLVLRIHHLMSTRKRGPFVSLTLMSRWRNILGLHVPVASFLHKHPHVFHVFTHPLRRNTCCRITKGMKDLILLEGVVLKQQQMEAVKRVKKLLMMSVSGTLRLHALRLIRRELGLPGDFRDSILAKYSGDFRLVNLEVVELVHWDAELGVAQVEKWREKEYVEKWLSEFETKFAFPISFPTGFKFERGFRERLKNWQRLPYTKPYEKKEVVRVKTCGGIERYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFGIEVNVRELLLRHAGIFYLSTKGKTLTVFLREAYRKGGLIEPNPVYEVRRNMLDLVLLGCRKTRQLVACDESKEESSSSVVYEVNEEGERQGDWVIPFLENCEENRSP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00520 419 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 16 416 - -
Cca07g00520 419 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 16 416 IPR045040 GO:0003723
Cca07g00520 419 Pfam Plant organelle RNA recognition domain 42 371 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00520 Cca-Chr7 7422012 7425444 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00520 - - gmx:100789857 722.62