Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca07g00516 | ATGACTGCTGAGACCCAGACCCAAGAGGAGCTTCTTGCGGCGCACCTCGAACAACAAAAGATCCATGATGATGAGCCTTTAGTTGAGgatgatgatgatgatgacgaggaagatgatgacgatgatgaggatgatgaCAATGCTGAAGGTCAAGAAGGTGATGCATCTGGTAGGTCCAAGCAAACCAGAAGTGAAAAGAAGAGTCGTAAGGCAATGCTTAAACTTGGAATGAAACCTGTTGTAGGTGTCAGTCGTGTAACTGTCAAGAAAAGCAAGAACATCCTGTTTGTTATCTCAAAACCAGATGTTTTCAAGAGCCCAACTTCTGACACATATATTATATTCGGGGAAGCTAAGATTGAAGACTTGAGCTCACAGTTACAAACTCAGGCAGCAGAGCAATTCAAGGCTCCTAATTTGAGCAATGTGGGAGCGAAGCCTGAACCCTCTGCTGCTGCTCAAGATGATGAGGAAGTAGATGAGACTGATGTAGATCCCAAGGATATAGAGTTGGTAATGACTCAAGCTGGTGTGGTAAGATCAAGAGCTGTCAAGGCTCTCAAAGCTGCCAATGGTGACATTGTTGCTGCCATTATGGAGTTAACTAATTAA | 612 | 0.4052 | MTAETQTQEELLAAHLEQQKIHDDEPLVEDDDDDDEEDDDDDEDDDNAEGQEGDASGRSKQTRSEKKSRKAMLKLGMKPVVGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNVGAKPEPSAAAQDDEEVDETDVDPKDIELVMTQAGVVRSRAVKALKAANGDIVAAIMELTN | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca07g00516 | 203 | Gene3D | - | 71 | 124 | IPR038187 | - | |
| Cca07g00516 | 203 | CDD | UBA_NAC_euk | 166 | 202 | - | - | |
| Cca07g00516 | 203 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Cca07g00516 | 203 | PANTHER | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN | 5 | 203 | - | - | |
| Cca07g00516 | 203 | MobiDBLite | consensus disorder prediction | 51 | 72 | - | - | |
| Cca07g00516 | 203 | PANTHER | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED | 5 | 203 | IPR016641 | GO:0005854 | |
| Cca07g00516 | 203 | MobiDBLite | consensus disorder prediction | 136 | 165 | - | - | |
| Cca07g00516 | 203 | ProSiteProfiles | NAC A/B domain profile. | 62 | 127 | IPR002715 | - | |
| Cca07g00516 | 203 | Pfam | HYPK UBA domain | 164 | 202 | IPR044034 | - | |
| Cca07g00516 | 203 | Pfam | NAC domain | 65 | 120 | IPR002715 | - | |
| Cca07g00516 | 203 | SMART | NAC_2 | 65 | 121 | IPR002715 | - | |
| Cca07g00516 | 203 | MobiDBLite | consensus disorder prediction | 26 | 50 | - | - | |
| Cca07g00516 | 203 | Gene3D | - | 163 | 201 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca07g00516 | Cca-Chr7 | 7304741 | 7307487 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca07g00516 | K03626 | - | gmx:100500056 | 289.656 |