Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00515 ATGGCCAAAGGTGTTATCTCCGACGAAGAAGACGATGTCGAACTCGACGAGGAAGAGAGGGAGCCCGTTGAGGGCGACGAATTGGATGAGGGTCGCGATGTGGACAACGAAGACGAGGACGAAGAAGAGGAAGGGCAGGACGAATATGAAAATGACGGATTTATAGTAGATGACATAGAGGATGAAGATCAGGATGAAGAAGAGAGAGCAGAAAGTGATGAGGAGCGACAGAGGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTAGAGGACAATAATATCAATATTCATCGGCGGAAGGAGAGCAAAAAGTTTAAGCGGCTGAAAAAAGGCCGGAGGGATACTGAAGGGGAGCCCTCTGGGCTATCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGTTAAAACGCAGTTTATTTGGTGATGATGAAGGAGCCCCACTTGAAGACATTGCTgaagaggaggagcaaggagaagaggaagaggaTGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCTCCTATGAGACAGAGGAAGCTGAAGAAAAAGAAAACTAGGCAGGCACCAGGAGTCTCTTCCTCTGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTAGAAATGAGTGAATTTAGAGAGAGTAGACTTGAAGATGAATTTGAACCTATTGTTCTTTCTGAGAAATATATGACACAGAAGGATGACAGGATTAGGGAGCTTGATATTCCTGAGAGAATGCAGATATCAGAGGAGAGTACTGGTGCTCCTCCGTTGGATGCAAGTAGTATTGATGAAGAGAGTCAGTGGATAGTTAATCAACTTGGAAATGGAGCGGTCCCTTGGATTTCCAAGAATGTCCTTAACCCCCAAACTAATGAAATGGAACTACCAATTGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAATTAGATATTCCATTTATTGCTATGTATCGGAAAGAGGAGTGCTTAAGCCTATTGAAAGACCTAGAGCAGCTGGAGGCTGGTGATGAGAATTGGGATAAGAACGACAAGACACCTTCTCTGAAATGGCACAAGGTGCTATGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAAAAGCGGAAGAGTGCCCTCCAGTCATACTATAGTAAACGGTTTGAAGAAGAGTCCCGTCGTGTGTATGATGAGACAAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTTATGAGATCATTGAAGGAAGCAGAATCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGCGAAGCTGGTGTTGATGAAGGACAATACAAGAGACCAAAAAGGAAGTCAATGTATAGCACTTTCAGCAAGGCAGGTCTATGGGAGGTTGCAAGCAGGTTCGGGTGTAGTCCTGAGCAACTTGGATTATGTCTATCTGTAGTTAAGTTGCAAGAGTTGGAAGATCCAAAGGAAACACCAGAAGAGATGGCTTCTAACTTCACGTGTGCTATGTATGGTACCCCTGAAGAAGTACTTAAATGTGCTAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTAGCCACTTTCTTGACCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAATGGCTGCGGGAGAAGCCTTTGTCTAAATTTGGAGATGTGCAATGGCTCCTTATACAGAAGGCAGAAGAGGAAAAACTCATTCAAGTTACTATTAAGCTGCCTGAGGATTATCTTAATAAGTTAATAGACCAATTCAATGAATATTATATCAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTAATATTGCATGATGCCATTTTTCGATTCCTTTTACCATCTATGGAAAAAGAGGCAAGAGGTGTCTTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAGTATGGTAAGGCCTTGTGGAGTAAGGTTTCTGTGGGGCCATATCAACAGAAGGAAAATGATCTTGGTTCAGATGAAGAGGCTGCTCCTAGGGTTATGGCGTGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCATCAGGAGAAGTGCTAGATGTGCTTTACACTGGGTCTCTTACTTTAAGGTCACAGAATGTTAATGATCAACAACGGAAGAAGAATGACCAAGAACGTGTACTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACTCGTTTGAAGGAAGATATATACGAGGTCATTTTTAAGATGGTGGAGGAAAACCCTAGAGATGTTGGGCACGAAATGGATGGTCTCAGCATCGTTTATGGGGATGAATCTCTTCCCCGACTTTATGAAAATTCTCGAATTTCCTCTGATCAACTTCCTTCCCAGCAAGGCATTGTGAGACGGGCTGTTGCACTTGGGCGTCATCTCCAGAACCCATTGGCAATGGTTGCGACATTATGTGGACCTAGAAAGGAAATCTTGTCATGGAAACTAAGTCCTTTGGAGAGTTTCCTCAACCCAGATGATAAATTTACAATGGTTGAACAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCTCCATTGCAATTTATTTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCCTGGTAAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTTTGACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTTTTGCGTGTCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGCCAATTTATCGATTTGCTGGATGATACAAGAATTCACCCTGAATCTTATATTCTTGCCCAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGCACAGGtgatgctaatgatgatgatgatgCGCTGGAGATGGCCATAGAGCATGTTAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGAGAAGAAACGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTGATTCAAGGCTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGCAAAATGGTTCAAGTCACAGTTCGCAGAGTGCAAGCCCAGAAAGCAATATGTGGGCTTGAATCTGGTATGACTGGAATCCTCATGAAAGAAGACTATACAGATGACTGGAGAGATGTAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATCCAAAAGAATAGGTATCAAGTCTTCCTTGTTTGTAAGGATAGTGAAATGAGAAGTAATCGATTACAGAATAACCGTGACATTGACCCCTATTACCATGAAGACCGGAGCAGTGTTCAGAGCGATCAAGAGAAAGCTCGGAAAGACAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTATTGTCTGACAAAGATCCTGGAGAAAGTATAATCCGTCCGAGTTCCCGAGGACCTTCACATATTACTTTAACTCTTAAAATTACTGATGGAGTATATGCCCATAAGGATATCCTTGAAGGTGGGAAGGAACACAGGGACATTACAAGTTTACTCCGAATTGGGAAGACACTTAAAATTGGAGAGGACACTTTTGAGGACTTAGATGAGGTTATGGACCGTTACGTTGATCCCTTGGTGACTCACTTAAAGGCAATGCTAAACTATCGCAAATTCCGAAAGGGTACAAAAACAGAAGTTGATGAACTTTTGAAGATGGAGAAAGCCGAGTATCCTATGCGCATTGTCTATAGTTTTGGCATCGCACACGAGCATCCCGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCATGAGTACATCGGCCTTTACCCGAAAGGATTCAGGTTCAGGAAAAAGATGTTTGAGGACATTGATCGGCTTGTGGCATATTTTCAGAGGCATATTGATGATCCCCAGCATGATTCGGCCCCCTCCATTAGATCCGTTGCTGCTATGGTACCAATGCGAAGCCCTGCTACTGGTGGCTCATCTGGGGCATCTGTTGGTAGTGGCTGGGGTGGTTCAAACAATGAGGGTGGCTGGAGAAGTCACTCTTATGATAGGGATCGATCATCTACACCTGGTTCTAGGACAGGACGGGGTGAATACAGAAACAATGGGAATCGGGATGAACATCCTAGTGGAGTGCCTCGTCCATATGGTGGTGGACGAGGACGTGGTCGGGGTTCATACAACAATAGAGGACACAACAATAATGAAAGGCAGGACTCTGGTTATGGGGGCAGATGGAGTTCTAACAATACAAAAGATGCGGATGATGGTTTAAGCAATTTCCCTGGGGCCAAGGTTCAAAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGAAGTGGTGGAAGTAGTGGAGGCAGTGGTTGGGGAGGAGGTGGAGCTAATAACAGTGATAATGGTGGCTGGGGTGGACAGGGGAGTGGTGGTGCTGGTCCAAGTGATGGTGAACAAGGAAGCTCTGGCTGGGGAACTGGCTCCAAGAAACCACCACCAGCAGCAGCAGCTGATAACGGATGGGGTGGAAATTCTGGAGGTTGGTGA 4956 0.4312 MAKGVISDEEDDVELDEEEREPVEGDELDEGRDVDNEDEDEEEEGQDEYENDGFIVDDIEDEDQDEEERAESDEERQRKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEGEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEFRESRLEDEFEPIVLSEKYMTQKDDRIRELDIPERMQISEESTGAPPLDASSIDEESQWIVNQLGNGAVPWISKNVLNPQTNEMELPIDKDDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLEQLEAGDENWDKNDKTPSLKWHKVLWALQDLDKKWLLLQKRKSALQSYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLSVVKLQELEDPKETPEEMASNFTCAMYGTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFGDVQWLLIQKAEEEKLIQVTIKLPEDYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWSKVSVGPYQQKENDLGSDEEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSDQLPSQQGIVRRAVALGRHLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFTMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASEKKRQNKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKMVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSSVQSDQEKARKDKELAKKHFKPRMIVHPRFQNITADEAMELLSDKDPGESIIRPSSRGPSHITLTLKITDGVYAHKDILEGGKEHRDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKTEVDELLKMEKAEYPMRIVYSFGIAHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPATGGSSGASVGSGWGGSNNEGGWRSHSYDRDRSSTPGSRTGRGEYRNNGNRDEHPSGVPRPYGGGRGRGRGSYNNRGHNNNERQDSGYGGRWSSNNTKDADDGLSNFPGAKVQNSPGREAFPGGWGGSGGSSGGSGWGGGGANNSDNGGWGGQGSGGAGPSDGEQGSSGWGTGSKKPPPAAAADNGWGGNSGGW 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00515 1651 MobiDBLite consensus disorder prediction 9 70 - -
Cca07g00515 1651 MobiDBLite consensus disorder prediction 71 91 - -
Cca07g00515 1651 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 84 1650 IPR017072 GO:0032968
Cca07g00515 1651 SUPERFAMILY RuvA domain 2-like 910 1000 IPR010994 -
Cca07g00515 1651 SUPERFAMILY Tex N-terminal region-like 336 717 - -
Cca07g00515 1651 MobiDBLite consensus disorder prediction 1207 1234 - -
Cca07g00515 1651 PIRSF Spt6 3 1503 IPR017072 GO:0032968
Cca07g00515 1651 SUPERFAMILY Ribonuclease H-like 739 894 IPR012337 -
Cca07g00515 1651 Gene3D - 729 1119 IPR037027 GO:0006139
Cca07g00515 1651 MobiDBLite consensus disorder prediction 1594 1608 - -
Cca07g00515 1651 Coils Coil 56 87 - -
Cca07g00515 1651 MobiDBLite consensus disorder prediction 1530 1569 - -
Cca07g00515 1651 Pfam SH2 domain 1216 1433 IPR035420 -
Cca07g00515 1651 Gene3D - 1008 1100 IPR042066 -
Cca07g00515 1651 Gene3D - 1120 1208 IPR012340 -
Cca07g00515 1651 ProSiteProfiles S1 domain profile. 1127 1198 IPR003029 GO:0003676
Cca07g00515 1651 MobiDBLite consensus disorder prediction 138 160 - -
Cca07g00515 1651 SUPERFAMILY Nucleic acid-binding proteins 1122 1202 IPR012340 -
Cca07g00515 1651 MobiDBLite consensus disorder prediction 1459 1480 - -
Cca07g00515 1651 CDD SH2_Nterm_SPT6_like 1249 1337 IPR035019 -
Cca07g00515 1651 Pfam Holliday-junction resolvase-like of SPT6 738 894 IPR028231 -
Cca07g00515 1651 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 84 1650 - -
Cca07g00515 1651 Gene3D SH2 domain 1347 1443 IPR036860 -
Cca07g00515 1651 Pfam HHH domain 1014 1101 IPR041692 -
Cca07g00515 1651 MobiDBLite consensus disorder prediction 1454 1651 - -
Cca07g00515 1651 Gene3D - 496 932 IPR023323 -
Cca07g00515 1651 Gene3D - 261 1002 - -
Cca07g00515 1651 SUPERFAMILY SH2 domain 1252 1338 IPR036860 -
Cca07g00515 1651 SMART S1_6 1125 1198 IPR022967 -
Cca07g00515 1651 CDD SH2_Cterm_SPT6_like 1348 1434 IPR035018 -
Cca07g00515 1651 SMART rnase_8s 739 857 IPR006641 GO:0006139
Cca07g00515 1651 MobiDBLite consensus disorder prediction 162 198 - -
Cca07g00515 1651 Pfam Helix-hairpin-helix motif 898 999 IPR032706 -
Cca07g00515 1651 Gene3D SH2 domain 1235 1346 IPR036860 -
Cca07g00515 1651 SUPERFAMILY RuvA domain 2-like 1013 1102 IPR010994 -
Cca07g00515 1651 Pfam Acidic N-terminal SPT6 35 123 IPR028083 -
Cca07g00515 1651 Gene3D - 294 495 IPR023319 -
Cca07g00515 1651 MobiDBLite consensus disorder prediction 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00515 Cca-Chr7 7287092 7297544 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00515 K11292 - gmx:100809136 2823.88