Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00504 ATGACAGAGGTATCGATGTGTAGCAGCAGCGTCTCTGAGCTGAGTCCAGACGAGGAGAGGATCATGATCAGAGACATTGCTCTCGCTTCCCAAGCTAACAGCAAAGAAGGCGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACACTATGTATGATGGATCTTCCTTATCAGAACATTATGATTTGGCCAATTCAAGTGCTTTAAAGAGGCCAGCTGGTATTGATAATTCTGATTTGATAGATGATGCTGTGTCAGAGGACTCTAGTATGGGTATTGAGATTCATGATACTCTTTTAGAAGGTCGTGACTATGTATTACTTCCCCAAGAAGTTTGGAACCAATTATTTAGATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACTGAATTGACAGTAGAGGTGTATCCTTTACGGCTTCAATTACTTATGTTGCCAAAAAATGATCGTTTTGCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGAAAAGCTTGTGAAATATTTGATCTTCAGCCAGACCAAGTGTGTATTTGGGACTACTATGCCCGTCGGAAGCATGCTTTGATGAATGACATGGACAAAACTCTCGATGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAAGTCATCAACAATACAAACAACACAAATATTTCTCAAGAAAATGGGTCTGCACAGAGGGAAGCGAATTCTGTTCTTGTGGAGCCTTCAAAATCAATCTTATCAATTGCTGGTGGCTTATCTGCTAGCAAAGGTTCTGCATCTAAAGGCTACAACATGGACCTTTCTTCATCTCAGAACCTAAATTCCCCAGTTAGAGATGTGGAAAACCCTTATGGAACCAGTGGTGTCACCACAAGGGGTTCATTTGGTAGTCTCACTGGGTTGCTGAATCTTGGCAATACTTGTTACATGAATAGTGCGATTCAGTGCCTTGTTCATACACCGGAATTTGCTAGGTACTTCAGGGAAGACTATCATCAAGAAATAAATTGGCAAAATCCATTAGGCATGGTTGGTGAACTAGCCCTGGCATTTGGTGATTTGCTTCGAAAACTATGGGCACCTGGGAGAACACCAATCGCTCCTCGGCCTTTTAAAGCAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGGAGCTTTTAGCATTTCTTCTGGATGGTCTTCATGAAGACTTGAATCGTGTAAAGCACAAACCATATATAAAGTCTCGAGATGCTGATGGACGACCTGATGAAGAAGTGGCTGATGAATATTGGGCAAATCATATTGCTCGCAATGACTCCATAATTGTTGATGTATGCCAGGGACAATACAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAAGTTTCTGTAACATTTGATCCTTTTATGTACCTTTCCCTTCCACTCCAGTCCACCACCACCAGGACCATGACAGTGACAGTTTTTGCTTGTGATGGGAATGCCCTTCCATCTCCATGCACAGTAACTGTCCCTAAGCAGGGACGATGCAGAGATCTCATCCAGGCACTTAGCAATGCTTGCTCATTGAAGCATAATGAGAGGCTATTGCTTGTGGAGATAAGAAACCATTTGATCCATAGATATTATGAAGATCCTCTTCTATTGTTATCTAGTATCAAAGATGATGACCGTCTTGCTGCTTACAAGATTCCAAAGATAGACAAGAACACAAAATATCTCCAGTTGATACATCGTCGAAGAGAGCAGAGTAGTGACTCACACATCATATCTGGATGGAAACCATATGGAACACCTATTGTTTCATTGATTTCATGTGATGATACAGTCACAAGAGGTGATATACAAGTTATAGTTAATCGTATTCTCTCTCCTCTGCTAAGGAAAGGTAGCAATGTAGAACAAGCTACTAATTCTGAAGCAAGCATCCAAAAAGCTGCATCTGATCAATCCAGTTTTACTTCTGATGATGCATATGCTGCCAACATGGTGTCAAATTCAGTAAATAAGGATTCTACCAATTCAAAGTCATCACCAATGCCAACATTACCTCTTCTCTTGGTAGATGATAACAATGCTTGCATTGATCTTTCAATGGGAGAGGAGAAAGTAGTTAAACTGTCACCTTCGTCATCAAAAGTATTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCACTTGAGACTTTGCCTGAAATTTTAAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTCCTGCGTGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAAGCAAGCAAGAAGCTTGATTTGTGGAGGCTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCACAAACTGGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAACTCTCGCCGTCAACTGTATGAACTATATGCCCTGACAAATCATTATGGTAGTATGGGTAGCGGGCATTACACTGCACATATCAAGCTTTTAGATGAGAACAGATGGTACAATTTTGATGACAGCCACATATCACCCATAAGTGAAGATGAGGTCAACACTGCTGCTGCCTATGTTCTATTTTACCGGAGGGTGAAGACTGATGATGCAACTGTTAGTAACGGGGCTTAG 2811 0.4105 MTEVSMCSSSVSELSPDEERIMIRDIALASQANSKEGDTFFLITQRWWQHWIEYVNQDQTNTMYDGSSLSEHYDLANSSALKRPAGIDNSDLIDDAVSEDSSMGIEIHDTLLEGRDYVLLPQEVWNQLFRWYGGGPTLARKVISSGLSQTELTVEVYPLRLQLLMLPKNDRFAIRISKKETIGQLHRKACEIFDLQPDQVCIWDYYARRKHALMNDMDKTLDDANLQMDQDILVEVINNTNNTNISQENGSAQREANSVLVEPSKSILSIAGGLSASKGSASKGYNMDLSSSQNLNSPVRDVENPYGTSGVTTRGSFGSLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRTPIAPRPFKAKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTTRTMTVTVFACDGNALPSPCTVTVPKQGRCRDLIQALSNACSLKHNERLLLVEIRNHLIHRYYEDPLLLLSSIKDDDRLAAYKIPKIDKNTKYLQLIHRRREQSSDSHIISGWKPYGTPIVSLISCDDTVTRGDIQVIVNRILSPLLRKGSNVEQATNSEASIQKAASDQSSFTSDDAYAANMVSNSVNKDSTNSKSSPMPTLPLLLVDDNNACIDLSMGEEKVVKLSPSSSKVLVYIDWSQKLLEKYDTHPLETLPEILKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISPISEDEVNTAAAYVLFYRRVKTDDATVSNGA 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00504 936 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 321 925 IPR028889 -
Cca07g00504 936 Gene3D Cysteine proteinases 650 933 - -
Cca07g00504 936 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 935 - -
Cca07g00504 936 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Cca07g00504 936 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 322 337 IPR018200 GO:0004843|GO:0006511
Cca07g00504 936 Gene3D Cysteine proteinases 312 545 - -
Cca07g00504 936 SMART dusp 33 146 IPR006615 GO:0004843
Cca07g00504 936 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 867 884 IPR018200 GO:0004843|GO:0006511
Cca07g00504 936 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Cca07g00504 936 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 935 - -
Cca07g00504 936 CDD Peptidase_C19R 770 923 - -
Cca07g00504 936 Gene3D - 157 243 - -
Cca07g00504 936 SUPERFAMILY Cysteine proteinases 320 925 IPR038765 -
Cca07g00504 936 Pfam Ubiquitin carboxyl-terminal hydrolase 321 922 IPR001394 GO:0004843|GO:0016579
Cca07g00504 936 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Cca07g00504 936 Gene3D - 6 156 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00504 Cca-Chr7 7088996 7104190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00504 778 927 Miscellaneous Gene Families AT4G31670 33.987 4.42e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00504 - - gmx:100794067 1709.89