LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g00502	ATGACAAAAAAAGGGGTGGCATCAAGGAAGTGGAACCTCTTCAATTGGTATTTTTTCTGCATGGGATTGGCTTCTCTAAGTGCTTTGACCATTGTAGTTTACATTCAAGACAACATGGGCTGGGGTTGGGGCCTTGGAATTCCAACAATTGCCATGCTGTTATCTATAATTGCCTTTGTGTTGGGCTCACCACTCTATAAGACTGTGAAACCACATGGTAGTCCTTTGGTTCGTTTGGCACAAGTAGTTGTGGCTGCTGTAAAGAAGAGGAAGGAGGCTTTGCCAGATGATGACAAGCTTTTGTACCAAAATTGGGAGATAGATGCTCCTATTTCTCTGGAAGGAAGACTTTTACACTCACATCAATTCAAATGTTTGGACAAGGCTGCAATTGTGACAGATGAAGAGGTCAGAAATCCAAATGCACCACCAAACTTATGGAAAGTAGCCACCGTCCACAGAGTTGAGGAACTAAAATCCATCATGAGAATGCTTCCAATTTGGGCTTCAGGAATTTTACTGATAACCGCTTCATCAAATCAGCATAGTTTCGTGATTCAACAGGCTCGCACAATGGACAGACACATCTCTCACTCGCTCCAAATCCCCCCAGCCAGCATGGCCATTTTCAACGTCCTAACAATGATGATAGGCGTTGTTCTCTACGAACGCCTCTTTGTTCCCTTGGCTCGTAGATTCACAGGGAACCCTTCTGGCATCACGTGCCTACAGAGAATGGGAGTAGGGTTTGTGGTGAACATTTTAGCCACACTAGTCTCAGCATTGGTGGAAATGAAAAGAAAATCAGTTGCTGCCAAGTACCACTTATTGGACAATCCAAGTGCCACTATTCCTATAAGTGTGTTCTGGTTGGTGCCTCAGTATTGTCTTCATGGGGTGGCTGAGGTTTTCATGGTTGTGGGGCATTTGGAGTTTCTCTATGATCAGTCACCTGAGAGCATGAGAAGCACTGCTACAGCTTTATACTGCATAACTACTGCTATTGGGAACTATGTTGGTACACTCTTAGTGTCACTTGTGCATAAGTATTCTGTCAAGGAAAGGAACTGGTTGCCTGATAGGAACCTCAATAGGGGTAGATTGGAGTGCTATTATTTTCTTCTTAGTGGGATTCAAGTTCTCAATCTCATTTATTATTTAGTATGTGCTTGGTTTTACACTTACAAGCCACTGGAGGAAATTAGTGAAAGGAACAAGGAAGAAGATTATGAAATATCTCACATGTCAATTTTTAGAGACATATCGATGAGTAGCGCAGATATGGAGACAGGGAGGAGCATGAGCAGTGGCGAGGCAAAGAGGAAACGGCAGCAACGTCGTGGTGGCATCCGAACATTGCCTTTCATCCTTGCAAATGAATTCTGCGATAGATTTGCAGTAGCTGGTTTCAATGGTAACTTGATAAGTTACCTGACACAAGTGCTGAACATGCCACTGGTATCTGCCTCAAACATTCTCACAATATTTGGTGGAACGGCTAGCTTCACCCCTCTTCTTGGTGCTATCATTTCTGAGTCCTTCGCTGGCCGCTTTTGGACCATTACTGTTGCTTCTCTTATCTATCAACTGGGATTGGTGAGTTTAACAGTATCAGCTATACTCCCCCATTTTCGCCCCGCACCATGCCCAAAACAAGTGAATTGCCAAGAAGCCACATCTTCACAATTGAGTATACTCTACATCTCTCTCATCCTCACATCTCTTGGATCAGGTGGCATCAGGCCCTGTGTTGTGCCCTTCTTAGGGGACCAATTTGACATGACCAAAAAGGGTGTGGCATCTAGGAAATGGAACCTCTTCAATTGGTACTTTTTCAGCTTGGGGTTGGCTTCTCTAAGTGCTTTGACCATTGTGGTTTACATTCAAGACAACACGGGTTGGGGTTGGGGCTTTGGCATACCAACTATTGTCATGTTCGTATCCATCATTGCCTTTGTGTTGGGCTCACCACTCTATAAGACCGAGAAACCTGAAGGGAGCCCTTTGGTTCGTTTGGCCCAAGTGGTTGTGGCTGCTATAAAGAAGAGGAACGAGACTTTGCCCAACGATCCCAAGTTTTTGTACCAAAATAGGGACCTCGATGCTGCTATTTGTTTGGAAGGAAGGCTTTTACACACAAATCAATATAAATGGTTAGACAAGGCTGCAATTGTGACAGGAGAGGAGGCCGCTAGAGACCCAAACGCACGACCAAACCTATGGAAAGTGGCCACTGTTCACAGAGTGGAGGAGCTAAAATCCATCATAAGAACCCTTCCAATTTCCTCATCAGGAATTTTACTCATAGCCGCTTCATCACACCTTCCTAGCTTCGTAATCCAACAAGCCCGCACAATGGATCGACACCTCACTCACTCATTCCAAGTCTCTCCAGCCACCATGTCCATCTTCAGCGTCCTAACCATGATGTCGGGAGTTATCCTCTATGAACGTCTCTTTGTCCCCTTTGTCCGAAGATTCACAAACAACCCTTCTGGAATCACGTGCATACAAAGAATGGGAATAGGCTTCGTGATCAACACTATAGCCACACTAGTTTCAGCACCAGTTGAAGTCAGGAGAAAATCAGTTGCTGCCAAGTACCACTTGTTGGACGATCCAAATGCCACTATTCCCATAAGTGTGTTCTGGTTGGTACCTCAGTATTGTCTGCATGGTTTGGCTGATGTGTTCATGTCTGTTGGACTTTTCGAGTTTCTCTATGATCAATCACCAGAAAGCATGAGAAGCAGTGCCACTGCTTTGTATTGTATTGTGATAGCCCTTGGGAGCTATGCTGGGACACTGGTTGTAACGCTTGTGCATAAGTACAGTGGCGAGGAAAGGAATTGGTTGCCTGATAGGAACCTCAATAGGGGTAGATTGGACTACTATTACTTGCTTGTTAGTGGGATTCAGGTTTTGAATATTATCTACTTTGGAATTTGTGTTTGGTGTTACACTTACAAGCCATTGGAAGAAAATACTGATACTGAAGTGAACAAGGATGAGGATTTGGAACAGGCTAATGGAAAGATCTCAGTTGGCAATTCGAAAGATGGTGGAGATGCTGAATAG	3078	0.4435	MTKKGVASRKWNLFNWYFFCMGLASLSALTIVVYIQDNMGWGWGLGIPTIAMLLSIIAFVLGSPLYKTVKPHGSPLVRLAQVVVAAVKKRKEALPDDDKLLYQNWEIDAPISLEGRLLHSHQFKCLDKAAIVTDEEVRNPNAPPNLWKVATVHRVEELKSIMRMLPIWASGILLITASSNQHSFVIQQARTMDRHISHSLQIPPASMAIFNVLTMMIGVVLYERLFVPLARRFTGNPSGITCLQRMGVGFVVNILATLVSALVEMKRKSVAAKYHLLDNPSATIPISVFWLVPQYCLHGVAEVFMVVGHLEFLYDQSPESMRSTATALYCITTAIGNYVGTLLVSLVHKYSVKERNWLPDRNLNRGRLECYYFLLSGIQVLNLIYYLVCAWFYTYKPLEEISERNKEEDYEISHMSIFRDISMSSADMETGRSMSSGEAKRKRQQRRGGIRTLPFILANEFCDRFAVAGFNGNLISYLTQVLNMPLVSASNILTIFGGTASFTPLLGAIISESFAGRFWTITVASLIYQLGLVSLTVSAILPHFRPAPCPKQVNCQEATSSQLSILYISLILTSLGSGGIRPCVVPFLGDQFDMTKKGVASRKWNLFNWYFFSLGLASLSALTIVVYIQDNTGWGWGFGIPTIVMFVSIIAFVLGSPLYKTEKPEGSPLVRLAQVVVAAIKKRNETLPNDPKFLYQNRDLDAAICLEGRLLHTNQYKWLDKAAIVTGEEAARDPNARPNLWKVATVHRVEELKSIIRTLPISSSGILLIAASSHLPSFVIQQARTMDRHLTHSFQVSPATMSIFSVLTMMSGVILYERLFVPFVRRFTNNPSGITCIQRMGIGFVINTIATLVSAPVEVRRKSVAAKYHLLDDPNATIPISVFWLVPQYCLHGLADVFMSVGLFEFLYDQSPESMRSSATALYCIVIALGSYAGTLVVTLVHKYSGEERNWLPDRNLNRGRLDYYYLLVSGIQVLNIIYFGICVWCYTYKPLEENTDTEVNKDEDLEQANGKISVGNSKDGGDAE	1025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g00502	1025	PANTHER	NITRATE TRANSPORTER 1	435	1001	-	-
	Cca07g00502	1025	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	435	1001	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Cca07g00502	1025	SUPERFAMILY	MFS general substrate transporter	439	994	IPR036259	-
	Cca07g00502	1025	PANTHER	NITRATE TRANSPORTER 1	1	407	-	-
	Cca07g00502	1025	MobiDBLite	consensus disorder prediction	1000	1025	-	-
	Cca07g00502	1025	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	1	407	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Cca07g00502	1025	Gene3D	MFS general substrate transporter like domains	2	400	IPR036259	-
	Cca07g00502	1025	Pfam	POT family	9	357	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Cca07g00502	1025	Pfam	POT family	518	950	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Cca07g00502	1025	SUPERFAMILY	MFS general substrate transporter	13	403	IPR036259	-
	Cca07g00502	1025	Gene3D	MFS general substrate transporter like domains	424	995	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g00502	Cca-Chr7	7002937	7019386	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g00502	8	408	Organic Solute Cotransporters	AT1G68570	59.069	6.42e-167	500

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g00502	-		K14638	vun:114190486	1688.32